G415886


Basic Information

Item Value
gene id G415886
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54458230 ~ 54496389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471349
cactgcattaccctgcatggtgtaatgactagtcaaacatctccaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCCCTGCATGTTGTAATGCATAGTCAAAAATCtcacaactctgtgtaaagtctgttgtccaaacaCTACATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacaactctgtgtaaagtctgttgtccaaacactgcattcccctgcaaggtgtaatgactagacaaacatctccaaaaactgcattcccctgcaaaagtgtaatgactagacaaacatctccaaactctgtgcATAGTCTGTTGCACAATCACTGTTTTCCCATGCATGTTGTAATGAATAGTCAAAAATCTCACAACTCTGTGtgaagtctgttgtccaatcaatgcattcccctgcatggtgtaatgactagtcaaacatctccaaactctgtaTTAAGTTTGttgtccaaacactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaaatCTGTTGTCCAATCACAGCATTCACCACATGGTGTAATGACTCATCAAACATGTCCAAACTCTGTGtgaagtctgttgtccaatcactgtattcccctgcactgtgtaaagactagtcaaaaatctcaaaactctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgactaTTCAAACatctccaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgtaaagtctgttgtccaatcactgcattcccttgcATAGTGTAATGAATAGCCAAACATCTCAAAATGCTGTgttaagtctgttgtccaatcactgcattcccctgcactgtgtaaagactagtcaaaaatctcacaaCTCTGTGTAAAGCCTGTTGTCCAatgactgcattcccctgcatgatgTAATGACTATTCAAACATCTAcaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCCCTGCATGTTGTAATGAAAATTCAAAAATCtcacaactctgtgtaaagtctattGTCATAACACTGGATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaaaactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaagtctgctgtccattcactgcattcccctgtactgtataaagactagtcaaaaatctcccaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgttaagtttgttgtccaaacactgcattcccctgcatggtgtaatgaatattcaaacatctccaaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgtccaaacactgcattcccctgcaaggtgtaatgactagacaaacatctccaaactc
>TU471353
cactgcattaccctgcatggtgtaatgactagtcaaacatctccaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCACTGCATGTTGTAATGAATAGTCAAAAATCtcacaactctgtgtaaagtgtGTTGTCCAAACACTATATTCCCCTGCAAGGTGTAATGACTAgacaaacatttccaaactctgtgtaaagtatgttgtccaatcactgcattcacCTGCACTGTGTAAAGACCCGTCAAAACTctcccaactctgtgtaaagtctgttgtcataacactgcattcccctgcaaggtgtaatgactagacaaacatctccaaactctgtgtaaagtctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgttaagtttgttgtccaaacactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaagtctgctgtccaatcactgcattcccctgcactgtataaagactagtcaaaaatctccaaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgtccaaacactgcattcccctgcaaggtgtaatgactagacaaacatttccaaactctgtgtaaagtatgttgtccaatcactgcattcccctgcac
>TU471348
tcacaactctgtgtaaagtctgttgtccaataatTGCATTCTCCTGCATGGTGTAATAACTAGACAAACAtctccaaacactgcattcccctgcaaaaGTGTAATGACCAtacaaacatctccaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgtaaagtctgttgtccaatcactgcattcccttgcATAGTGTAATGAATAGCCAAACATCTCAAAATGCTGTgttaagtctgttgtccaatcactgcattcccctgcactgtgtaaagactagtcaaaaatctcacaaCTCTGTGTAAAGCCTGTTGTCCAatgactgcattcccctgcatgatgTAATGACTATTCAAACATCTAcaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCCCTGCATGTTGTAATGAAAATTCAAAAATCtcacaactctgtgtaaagtctattGTCATAACACTGGATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcaagGTGTAATGACTAGACAAACAtatccaaactctgtgtaaattctgttgcctaatcactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtatagtctgttgtccaaacactgcattcccctgcatagtgtaatgaatagacaaacatttccaaactctgtgtaaagtctgctgtccaatcactgcattcccctgcactgtgtaaagacCCGTCAAAAGTctcccaactctgtgtaaagtttgttgtccaatcactgcattcccctgcatagtgtaatgaatagtcaaacatctccaaactctgtgtaaagtttgttgtccaatcactgcattcccttgcATAGTGTAATGAATAGCCAAACATCTCAAAATGCTGTgttaagtctgttgtccaatcactgcattcccctgcactgtgtaaagactagtcaaaaatctcacaaCTCTGTGTAAAGCCTGTTGTCCAatgactgcattcccctgcatgatgTAATGACTATTCAAACATCTAcaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCCCTGCATGTTGTAATGAAAagtcaaacatctccaaactctgtgtaaagtctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgttaagtttgttgtccaaacactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaagtctgctgtccaatcactgcattcccctgcactgtataaagactagtcaaaaatctccaaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgtccaaacactgcattcccctgcaaggtgtaatgactagacaaacatttccaaactctgtgtaaagtatgttgtccaatcactgcattcccctgcac
>TU471357
TCtcacaactctgtgtaaagtctattGTCATAACACTGGATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaaaactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaagtctgctgtccattcactgcattcccctgtactgtataaagactagtcaaaaatctcccaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgttaagtttgttgtccaaacactgcattcccctgcatggtgtaatga
>TU471355
TCtcacaactctgtgtaaagtctattGTCATAACACTGGATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaaaactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaacactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106570272, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471349 False 1964 lncRNA 0.40 5 54458230 54493001
TU471353 False 809 lncRNA 0.41 4 54458230 54462509
TU471348 False 1655 lncRNA 0.40 2 54460736 54462509
TU471357 False 658 lncRNA 0.40 2 54492179 54495349
TU471355 True 429 lncRNA 0.39 2 54494692 54496389

Neighbor

gene id symbol gene type direction distance location
LOC110524051 LOC106613536 coding upstream 79492 54374204 ~ 54378738 (+)
mutyh mutyh coding upstream 94515 54346481 ~ 54395448 (+)
obscna LOC106613530 coding upstream 289272 54083355 ~ 54168958 (+)
zgc:153738 LOC106613531 coding upstream 400855 54049039 ~ 54057375 (+)
LOC110524043 NA coding upstream 433726 54019945 ~ 54024504 (+)
dio1 dio1 coding downstream 51124 54547513 ~ 54550162 (+)
LOC110522872 LOC106613984 coding downstream 55966 54552355 ~ 54554389 (+)
LOC118964620 NA coding downstream 93569 54589958 ~ 54595332 (+)
LOC110524055 NA coding downstream 99108 54595497 ~ 54613143 (+)
fpgt fpgt coding downstream 121135 54617524 ~ 54620337 (+)
G415819 NA non-coding upstream 113129 54344875 ~ 54345101 (+)
G415812 LOC106562530 non-coding upstream 124177 54333817 ~ 54334053 (+)
G415807 NA non-coding upstream 129534 54328399 ~ 54328696 (+)
G415750 LOC106613533 non-coding upstream 146089 54308835 ~ 54312141 (+)
G415887 NA non-coding downstream 6646 54503035 ~ 54513549 (+)
G415914 NA non-coding downstream 58687 54555076 ~ 54556336 (+)
G415946 NA non-coding downstream 93685 54590074 ~ 54613142 (+)
G416005 NA non-coding downstream 192193 54688582 ~ 54688882 (+)
G416362 NA non-coding downstream 339224 54835613 ~ 54837792 (+)
G415809 NA other upstream 127750 54330080 ~ 54330480 (+)
G415808 NA other upstream 128450 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 274800 54177929 ~ 54183430 (+)
G414488 LOC106562530 other upstream 1345723 53112183 ~ 53112507 (+)
G416857 NA other downstream 828256 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 2121501 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2229796 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2427535 56923924 ~ 56925176 (+)

Expression


Co-expression Network