XLOC_023415 (kpna1)


Basic Information

Item Value
gene id XLOC_023415
gene name kpna1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20941360 ~ 20956781 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046308
AGAACTGGCAACACCGAGAAGCAGACATGCGCTTCGCACACGATGTCCTCTCACAATGCGCATGTGCAGTGTCACTATACCGGCGGAGGCTGAACGGTTGCAGCTTAAACGACGCAGGGATAAACGAGGCCGTTTTGACAGCAGACAACATCATGAGTCAAGGGAAGGACAATGCACGTCTCAAAAGCTATAAAAACAAATCGCTCAACACAGAtgagatgaggaggaggagggaggAAGAAGGCCTGCAACTTCGAAAACAAAAGAAAGATGAACAACTGTTCAAGCGCAGAAATGTGGCCACAGTGGAGGAGGATGGAGCACTGGAAGATGATGGGATGTCTGACAGCGGATACCTGGAATCACAGGCCAACAATATGGACCAAATCACGGGAAGTGTTATTTCTGAAGACATGATACAGATGATCTTCTCCAGCTCTCCAGAACAACAGCTCATAGGAACACAGCGCTTCAGAAAGCTCTTATCTAAAGAGCCTAATCCCCCTATTGATGAGGTTATTGCCACCCCTGGTGTCGTGGAGCGATTTGTTGAGTTCCTGAAAAGAAGAGAGAACTGCACACTACAGTTTGAAGCAGCGTGGGTTCTGACTAACATCGCCTCAGGAACATCCCACCAGACGCGTGTGGTCATCCAGGCTGGGGCAGTGCCCATTTTCATTGAGATGCTCAGCTCAGATTTTGAAGATGTACAGGAGCAAGCAGTGTGGGCTTTAGGTAATATCGCCGGTGACAGCACTGAATGCAGGGACTATGTTCTGGACTGCAATATTTTGCCCTCTCTAGTACAGTTATTGGCCAAACAAAATCGCCTGACTATGATGAGAAACGCAGTCTGGGCTCTGTCTAACCTGTGCAGAGGGAAAAATCCACCACCGGATTTTGCCAAGgTGTCACCGTGTCTCAGTGTTCTGTCCTGGCTGCTGTTTGTGAATGATACTGATATTCTGGCTGATGCATGCTGGGCTCTTTCTTATCTGTCTGATGGTCCCAATGAGAAGATCCAGGCTGTTATTGACTCAGGAGTCTGTCGCAGACTAGTGGAGCTGCTGCTACATGCAGAATATAAGGTGGTGTCTCCTGCTCTAAGAGCCGTGGGGAACATAGTGACAGGAGATGACCTACAGACTcagGTGATTCTTAACTGCTCTGCCCTGCAAAGTCTTCTTCACTTGCTGAGTAGCCCCAAAGAGTCCATTAAGAAAGAAGCATGTTGGACCATCTCCAATATCACAGCTGGCAATCGTGCACAAATACAGATGGTGATTGACGCAGACTTGTTCCCCCCATTAATAAGTATTCTGCAAGTAGCTGAGTTTCGTACTAGGAAGGAGGCAGCATGGGCAATCACGAATGCCACATCTGGAGGATCCGCAGAACAAATCAGGCATCTTGTTGAGCTTGGGTGCATTAAGCCCTTATGTGACCTCCTGACGCTGATGGACTCAAAGATTGTACAGGTGGCACTAAATGGCTTGGAGAACATCCTGCGACTGGGTGAGCTGGAAGCTAAAAGAGGAGGAGGTATCAACCCCTACTGCGCCCTCATCGAGGAGGCATATGgCTTAGACAAGCTGGAGTTTCTCCAGGGCCACGAGAACCAGGAGATCTACCAGAAGGCTTTCGACCTGATCGAGCGCTACTTCAGCACCGATGATGAAGATCCGTCCCTGGCACCTGCTGTCGACCTCCAGCAGCAGCAGTTCCTCTTCCAGCAGTGCGAGGCTCCCATGGAGGGTTTCCAACTTTAACACTGTCCTTCACCCCCATTTCTTTTCCAAGCAATCCACCCTGGAGGGTGTGAGACGCCCCCCTGACCCAAGAGAGCGAAGGATTCAACAAACGAACATTTCAAGTAGAGTGTGATTTTACAAGAGCGTGTGTTGCCGGTCAACCCATTTCCTCCCTCTTGTCCTACTTCCCTGGTGTCATTGGCCCAGTCCAGATTGATGGCCACATGCAGAAAATGTGATTTAGTAGACTTCAATATCCCACTTCCTTCATTTAGCCCTTCAAAGCACGCATATCCCATCAGTCCCGATTCAGGAAAACTGCATCCAGCAATGAAGTTGAGGAAAGCTGGGAAAGCACAGCTTGTTTGATGTGACTGCAATATTGACTCCGACAAGGGATCTGTTTTTTCATCTGATTTCAAACACTGGACTGACCGTGTGACTGTGTTTGCATGTCTCCAAAATCCCCCCCCCCCGAAAAAAGTGAGATTGAAGGACGCCCAACGAAGGACCTTCTCATTTGACCCAGACAACTCAAAGACGGACTTGAAGGGTTTGGTCTGCGATTTCTGAATGGTGATTCCAGTCAGAAAGTGCTTTTTTGACATGCATTGAACGTGCATTCCGACAATGACTGAACATTACAGGCTCTGCCTCTCCTTTTAGGGTTACACACAATTTGCACCTTTGGAATTCTGGGAGATGGAGTCTTGCCACTCACTGAGACTGCTGGACAGACAAAAAAAGACAGGTTCTGGATCCTGTGCATTTTACCATTTGATACTTCAAAAGTACAATTTCACTCGAGCATCATCTTCATCGGCACTTTACGTTCAGAACAGACACCGTTTGTTTCGATTCGAGCCTCTGTAGTCAGTTTTAGGCCCCTCGAAAATACTTCTCAGGATGCAGAGGATGTATTTACAGAAAACACTAAGTATTCAAGAGTGCTGAGAAAAACCAACCCTTCCAAGCTTCCACCATATGTTAACAAACTGAAAGGCTTTCGCTTCccaacaagtgtgtgtgtgtgacaaacattaatattaatgtctaatcatgctaaatgcacacacattcagacacaccAGTGACTAGAGGTATATAAGGAAAAGTACAGAGCAGCAACTTGCTctggtttgtttttctgtttgattttattgtatttcCGCGATGGTTAGAATCTCTTAATACCGAAGGTGCCATAATCCTTattgaaaatgacaaacaaatgGACTTTCACGAAGACTGAACAATTTTATCAACAAAATTTAATCGTCAAATTTGACTGGGTATTAGCTCAAGATATGATTGTTTACTTgcgttttatttttcttatttcaaTGTCAGATTCTTCCCAAGAGATGACCagctcttttgtgttcaatactGCTGTCGTATTGAGGTTGTGTAACTGTTCTCTGTTACGCCATTTGCATAAATGCTGTTTCATGAAG

Function

symbol description
kpna1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus and postsynapse to nucleus signaling pathway. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA1 (karyopherin subunit alpha 1).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0099527 postsynapse to nucleus signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05207 Chemical carcinogenesis - receptor activation
ko05164 Influenza A
ko05132 Salmonella infection
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-091116-39 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus and postsynapse to nucleus signaling pathway. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA1 (karyopherin subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000016360

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046308 True 3208 mRNA 0.46 14 20941360 20956781

Neighbor

gene id symbol gene type direction distance location
XLOC_023414 ccdc58 coding downstream 14548 20922544 ~ 20926812 (-)
XLOC_023412 si:ch211-161h7.5 coding downstream 26310 20909922 ~ 20915050 (-)
XLOC_023411 si:ch211-161h7.4 coding downstream 32965 20892782 ~ 20908395 (-)
XLOC_023410 vipr1b coding downstream 133077 20708174 ~ 20808283 (-)
XLOC_023409 nktr coding downstream 282692 20643658 ~ 20658668 (-)
XLOC_023416 qtrt2 coding upstream 101998 21058779 ~ 21090584 (-)
XLOC_023417 zdhhc23b coding upstream 166055 21122836 ~ 21131607 (-)
XLOC_023418 gramd1c coding upstream 175093 21131874 ~ 21150169 (-)
XLOC_023419 atp6v1ab coding upstream 197339 21154120 ~ 21172122 (-)
XLOC_023420 boc coding upstream 249462 21206243 ~ 21258945 (-)
XLOC_023665 dre-mir-735 misc upstream 17221180 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 409547 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 753930 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 756335 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 878310 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 887103 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 1006271 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 1097028 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1352163 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1415205 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1922160 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04248388_04258010 KPNA1 coding CI01000018 null 4248122 ~ 4258038 (-)