G415914


Basic Information

Item Value
gene id G415914
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54555076 ~ 54556336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471401
CAGCACTCTTTCCCCcaatttgaaaaaaaatatatataccagCAACAGGTGTATAATGCTTAATATTCACAGAAAATGAAATAAACGTTCACATTTACAAGACTGCCGCTAAGTTTATGATACTAGAATTGGTTTACAAAGCTTTAACTAATCTTTAAATAACTGGGCCAATACACGTAGTCAAATTtgtatcaaaatatttttttaaataaccaaaAAAATaccttgagaaaaaaaaaaaaacgaatctgCATCTCAGGTAACAATGGGTTTAACTTTCATCATCACCGTGATGGAACAGTAGGAAAACAGACTGCTACAACGATGGCGAGAAAAAAGGGCACAGAGTGTTAAGCACAGGCAGGGAAGAGGTTAAACACACCACATGTGGACTGGAGCAGCACTAGGTAGTATGTTGTACAAAGATCTTAGTCATGCACCCATGGTTTAGCCCAAGTTAGCTTTCCCCTTGACAGAACAAGAACAGCAGTCCGACTGTTTAAATAAAAAGCAACATAAAACCAGTGCAGAATAAGATCGCTCTCCTCGACAAAAACAGAACCCACAAAACACATTCCCTATCGACGCATCGCATCCGATCCGACATTTTAAAAACCCTCGCTGAGCACTTCGAAACTGTTACAGGCCCTATTCTTACTAAGGCCCAATTCGATCGCACCACTTCCCTTTGAAAATGTGGCTAAATAGTGGGAGCTAGTACATCGGGACAAAGTCATTCAATGGTGTGGTCACAGAGTTACAGGCAGATTCAGATGCCATGTTTTCAGACTAGTCTTGTGACATACTACATGTGGCTGAGCGCGGGATCTGaaaaatgaaaacaaaaagataCATTTCTCCTAGTTCACAATGCACACTTCAGTGTTTTAGGTGGCAAAAGCTGAAACGGGTTCTGCACTACTTGCACTACAAAGCAATAATTAAAGCACGTGTCATGTATGCAGTAGTTTCCGTCGCTGGTTTCGTCACACTTGGGGGTGGTGATTATAGAAGAACTGTCCTTCATTTGGAACGAGGAGGAGCAGGAGTCACCAGCCATTTTGAAAATGGGTATATCAGCATTCTGGAATTGTGTGGAACCAAAATGGCACTCTGTCCCTGGTTCTGTGCTGATGTGTTTTGGCCATGTCCTGTTATGAGCTCAGATCCTCAGTGATGGCAGATGGAGGGGGATGTCACACACTCATCGTCATGGTAGGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471401 True 1223 lncRNA 0.42 2 54555076 54556336

Neighbor

gene id symbol gene type direction distance location
LOC110522872 LOC106613984 coding upstream 687 54552355 ~ 54554389 (+)
dio1 dio1 coding upstream 4914 54547513 ~ 54550162 (+)
LOC110524051 LOC106613536 coding upstream 176338 54374204 ~ 54378738 (+)
mutyh mutyh coding upstream 191361 54346481 ~ 54395448 (+)
obscna LOC106613530 coding upstream 386118 54083355 ~ 54168958 (+)
LOC118964620 NA coding downstream 33622 54589958 ~ 54595332 (+)
LOC110524055 NA coding downstream 39161 54595497 ~ 54613143 (+)
fpgt fpgt coding downstream 61188 54617524 ~ 54620337 (+)
LOC118964715 NA coding downstream 67354 54623690 ~ 54636937 (+)
LOC110524059 LOC106613985 coding downstream 145776 54702112 ~ 54716209 (+)
G415887 NA non-coding upstream 41527 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 58687 54458230 ~ 54496389 (+)
G415819 NA non-coding upstream 209975 54344875 ~ 54345101 (+)
G415812 LOC106562530 non-coding upstream 221023 54333817 ~ 54334053 (+)
G415946 NA non-coding downstream 33738 54590074 ~ 54613142 (+)
G416005 NA non-coding downstream 132246 54688582 ~ 54688882 (+)
G416362 NA non-coding downstream 279277 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 283026 54839362 ~ 54839580 (+)
G416377 NA non-coding downstream 302694 54859030 ~ 54859350 (+)
G415809 NA other upstream 224596 54330080 ~ 54330480 (+)
G415808 NA other upstream 225296 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 371646 54177929 ~ 54183430 (+)
G414488 LOC106562530 other upstream 1442569 53112183 ~ 53112507 (+)
G416857 NA other downstream 768309 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 2061554 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2169849 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2367588 56923924 ~ 56925176 (+)

Expression


Co-expression Network