G416005


Basic Information

Item Value
gene id G416005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54688582 ~ 54688882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471519
gtaccagtaccaatgCCAGCAACAGTTAGTCCAGCTACAATCAGTAAGAAGGTTAGAGACCTAACAAATCAAATTGAGCTTGACAACAGCGAGAGAGTAGTTAGGAGTCACTCAGATTGCAACACATGGAAGGGAATCTCCAGAGCACTCTCTAAATGGTTAACACACATGCCACTAATAAATAGAACCCTCCATTCAGGAGGAAAGTTATTAGAAGTCATGAACCATGATCACACCACGTACGACTGGTTCAGTGCTTAGAGTACTTCCGTCGTGAGGTTAACTCCTCCATGGATAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471519 True 301 lncRNA 0.44 1 54688582 54688882

Neighbor

gene id symbol gene type direction distance location
LOC118964715 NA coding upstream 51645 54623690 ~ 54636937 (+)
fpgt fpgt coding upstream 68245 54617524 ~ 54620337 (+)
LOC110524055 NA coding upstream 75439 54595497 ~ 54613143 (+)
LOC118964620 NA coding upstream 93250 54589958 ~ 54595332 (+)
LOC110522872 LOC106613984 coding upstream 134193 54552355 ~ 54554389 (+)
LOC110524059 LOC106613985 coding downstream 13230 54702112 ~ 54716209 (+)
LOC110524062 LOC106613542 coding downstream 129731 54818613 ~ 54833842 (+)
LOC110524063 LOC106613544 coding downstream 179489 54868248 ~ 54876340 (+)
LOC110522972 LOC106613545 coding downstream 187981 54876863 ~ 54888523 (+)
LOC110524066 LOC106613547 coding downstream 237451 54926333 ~ 54935194 (+)
G415946 NA non-coding upstream 75440 54590074 ~ 54613142 (+)
G415914 NA non-coding upstream 132246 54555076 ~ 54556336 (+)
G415887 NA non-coding upstream 175033 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 192193 54458230 ~ 54496389 (+)
mutyh mutyh non-coding upstream 293134 54346481 ~ 54395448 (+)
G416362 NA non-coding downstream 146731 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 150480 54839362 ~ 54839580 (+)
G416377 NA non-coding downstream 170148 54859030 ~ 54859350 (+)
G416378 NA non-coding downstream 170559 54859441 ~ 54859821 (+)
G416382 NA non-coding downstream 171265 54860147 ~ 54860415 (+)
G415809 NA other upstream 358102 54330080 ~ 54330480 (+)
G415808 NA other upstream 358802 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 505152 54177929 ~ 54183430 (+)
G416857 NA other downstream 635763 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1929008 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2037303 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2235042 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2254956 56943838 ~ 56958165 (+)

Expression


Co-expression Network