G416362


Basic Information

Item Value
gene id G416362
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54835613 ~ 54837792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471947
TAGAGGACCAGAAGGTAGGCTTAAAACAGACGGTCATTTCTCTAAGTGTCAAAAGCTAGTGGAAATTCTTGGCAAATTTGAAATGTGAAGGTTATGAGGCGTTTCAGGAGATATTACTCATGTTTGCCCTGACACCTAGTGGGCTATTTGTGTCCTCCATCTGTATGGACTGGTCTGTGGGTGCGGGAGAATGAATGTCTTGTCGTCTATTACTGTTTTAACGTGGATTGTGGGCGTAGCGGGGGAACTTTGCAGTGTGTGGGTGGTCTATATGGACAACAATTGTTCCAATCACCCGAGGAAAATTGCAATTGCCACGTTTTCCGCCtttatgtgtttttcaccagtaGAATATAGACCCACCCTTTGTCTTCAGTGGATAGTTCATTGTTGACAAAATATTCTAAATATGGGCCTTACAGTCTGTGAGGAACCTTTATTATAGATCCATCTGCGAGGCCCTTATTTAAACTGGCAAGCCTGAAATGAACCTTTACCATGATAGACCAGCCTGTAAGGCCACTATTTGCTCTGATCAGCCTCCGAGGAGCCTTTATTAAAGACCATTAGACCAGCCTGTTAGGCCCATATTTACTCTGACCCGCCTGAGAGGAAACTATATTATCGATTAGCCTGTAAGGCCCCTATTTACTCAGATCAGCCTCAGAAGAGCATGTATTGTATTAGTTGTATGAATAGATAGCGCTATTTAACCAGCCAGCTAAGATACAGCTTGCTATATTAGCTCATTGCTCAAGAGAAAATAGCTAGCTAAGAAGTTAGCAGTGGTGTAGTACttgtgtaaaaatactttaaagtactacttaagtcgtttttgggggtatttgtactttacttttttaaccacttttacttttacttcactacattcctaaagaaaataatgtactttttactccatacattttccctgacacccaaaagtacttgatacattttgaatgcttagcaggacaggaaaatggtccaattcacacacttatcaagaaaacgtccctggccatccctactacctgatctggcggactccATAAACACAAATGTGTTGAGGTGTGCCACCAGCTAtccgtaaatgtaaaaaaaatattaaaaaatggtgtagtctggtttgcttaatatagggaatttgaaatgatttatatgtttacttttgatacttaagtatatctaaaatcaaatacttttagacttttactcaagtagtattttactgggtgattttcactttcacttgagtcattttctattaatgcATCTTTACTTTTGCTGAAGcgtgacaattgggtactttttccaccactggcattGGTAGCTCTAATTGCTGCATTATCTTGTCAGATTAAAAACATCAGCAAAATAGTCAATTTAGCTGCAAGCTCCTTTAAAAAGATAACCAACCAGCTAAATAGCTTAGATTATATATATATCAGCCTGTATAATGTCTAAGTAGTCTTGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCCATTTCAGTGTTTTTGGATCAGCCAGCTAGATTAAATATTTCAAAATGGTTATTCTCGCTCTCCCCCTTTACATGTTTTAATTTGAATTGGCGTAGTTGCTTAAACATCAGCCTGTGAGGCAGCAGTGTGTAAACATCAGCCTGTGAGGCAGCAGTGTGTAAACATCAGCCTGTGAGGCAAACATAAGTCTGAGGGAGCAGTGCCTCACAGGCATAAGTCACTTGTGCTAGTAGTAGATTGTATTTGTTTTTCGCAATTATAGACTAAATTGTCGGTGGCGTGCTAAAATATGCTATTCCTGCCGTTGACCTGTGATGTTGTGTTCTTCAACAAAAAATAGGCAATATTCCTGTGTGTAAAGTTTCTGCAATGTCCCTGTAATGTTACTGCAATGTCCCTGTAATGTTACTGCAATGTCCCTGTAATGTTACTGCAATGTCCCTGTAATGTTTCTCGAATGTCCCTGTTAATGTTTCTACATCAAATAAAAGTGTATTGGTTGTgtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471947 True 2180 lncRNA 0.38 1 54835613 54837792

Neighbor

gene id symbol gene type direction distance location
LOC110524062 LOC106613542 coding upstream 1771 54818613 ~ 54833842 (+)
LOC110524059 LOC106613985 coding upstream 119404 54702112 ~ 54716209 (+)
LOC118964715 NA coding upstream 198676 54623690 ~ 54636937 (+)
fpgt fpgt coding upstream 215276 54617524 ~ 54620337 (+)
LOC110524055 NA coding upstream 222470 54595497 ~ 54613143 (+)
LOC110524063 LOC106613544 coding downstream 30579 54868248 ~ 54876340 (+)
LOC110522972 LOC106613545 coding downstream 39071 54876863 ~ 54888523 (+)
LOC110524066 LOC106613547 coding downstream 88541 54926333 ~ 54935194 (+)
LOC110522873 LOC106613548 coding downstream 117455 54955247 ~ 54957290 (+)
LOC110524067 LOC106613550 coding downstream 194410 55032202 ~ 55041553 (+)
G416005 NA non-coding upstream 146731 54688582 ~ 54688882 (+)
G415946 NA non-coding upstream 222471 54590074 ~ 54613142 (+)
G415914 NA non-coding upstream 279277 54555076 ~ 54556336 (+)
G415887 NA non-coding upstream 322064 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 339224 54458230 ~ 54496389 (+)
G416367 NA non-coding downstream 1570 54839362 ~ 54839580 (+)
G416377 NA non-coding downstream 21238 54859030 ~ 54859350 (+)
G416378 NA non-coding downstream 21649 54859441 ~ 54859821 (+)
G416382 NA non-coding downstream 22355 54860147 ~ 54860415 (+)
G416384 NA non-coding downstream 23959 54861751 ~ 54862192 (+)
mutyh mutyh other upstream 484998 54346481 ~ 54395448 (+)
G415809 NA other upstream 505133 54330080 ~ 54330480 (+)
G415808 NA other upstream 505833 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 652183 54177929 ~ 54183430 (+)
G416857 NA other downstream 486853 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1780098 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 1888393 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2086132 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2106046 56943838 ~ 56958165 (+)

Expression


Co-expression Network