XLOC_023416 (qtrt2)


Basic Information

Item Value
gene id XLOC_023416
gene name qtrt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21058779 ~ 21090584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046309
TGGTGAGTAAGTATCAAATGCACTACACAGGACTGTAATGTTAGATGTTTTGACGTCATAAATGTGAGACGCAAGTCAAAGACCGACGAACAATTTCTGCGACTTGAAGTTCTCACATGTTCTGCTGTGTGAAGCAGCTAAAATCAGTCTGGTAAGCCTTGAAGCAAATGACGTTTTTTTATGATCGTATAtgacatattattattttcatgttatAGAAATATATGTTCTGTATGTTATGAAATTGCTTTTAGACACGAtataaacacagatttgaataTTTTGAGGGACTCATAAGGTTTTATTTATGATCGCATATGACTTTAATACTAAGTTATGCATAACgttacgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtaaaccTGCTTTCAGACAGGACATAAACATTCAGATTTGAAAACTAAACAGTATTGTAATCTGCTTCACTAGTTTATATATTTGCTTATCAAGCTTTGTATAACTGTGAAAAGCCAGAGTAAGGCAGAGGATAGAATTGTTTTTGTGTTTGACGACTGATGAGCTATCGTTCCTCTCTCCAGATGAAGCTGGAGTTGTCTCGAGTGGTCCAGGGATGCCGCCTGGGGGTTTTGACTGGTCTGGGGAAATTAGGACAACACTCACTAGAGGTGCCCGGCTGTCTCCTGTACACCCGCTGTGCCACTGTTCCACATCTGACCCAGGACACATTACTAACCTTGAGCGACCTGCCAGCCGTCACACAAGTGTCTGTGGATAGCCTTGCAGAGCACCAAGAAGTTCTGGAGGAGTTCAAAGAGGGTGTCAGAAAGTTTGCAGGTCTTCGTGATACTGTGATTTTCTGCTCTCTTCATGATTCTGCGAGCCCCAGTCCTGCCGGTCACGTCACCAACAAGACAGTGTCGGTGTGGGGCAGTGGTGGAAGGATAGAGCTGACGGCGGCTCGGTTCATGTCGATTCAGGCTGCCGTCCAGCCCGACTGCTATCAGAGCATGGCAGACGGAGAGACCTGGCAGGCCAATACATCTCGCAAGAGAGTCCGCAAAGCAGTGGACAGGACTCTGGCCCATCTGGATGAATGTCTGGTCCTGCACCAGAAAACTCAGGAATTAAAACATGCTGAGATATTTGGGGTTGTGGAAGGTGGAGATATTTTGGAAGAGAGGCTCCGCTCAGCACGGGAGACTGCTAAGCGTCCTGTGGGTGGATTTGTCCTGGATGGATTTCATTCTTCTGCCATGGACCAGGATGTGAGAGCTCAGCTGATTCAAGAAACTTCTGCAGAGCTTCCTCAGGAAAAACCCAGACTGGTGCTGGGAGTGGGCCGTCCTGATGAGGTCATTAGCTGTGTTGAAGCTGGAGTCGACCTGTTCGAGAGCTTTTTCCCCTTCCAGGTGACGGAGCGAGGCTGTGCCCTTTCATTCAACTACACTATTGATCCTGACCCGGAGACGGCAGGTACATCAGCCTCTACAGTGTTGGAATGCAATGGAGAAACACCTGAAGTCAAAAAGCCGAGTGCAAATGAAGATGTGGAAAATATGACGCCTTTTGAAATCAATCTCAAAGACAAAAGATATCGTGATGATTTCCGGCCGCTTGTGGAGGGCTGCGTTTGCTACTGCTGTCAGAAGCACATGAGAGCATATGTCCATCATTTACTGGTGACCAACGAGCTACTCGCCGGTGTTTTACTCATGCTGCACAACATGGCACATTACCTCGGCTTCTTCAAAGCGCTGCGGGACGCAATAACCAGCGACCGTCTGCAGGACTTTAAAAACACAGTTCTTCATCGCAGACAAGGTGATTGAAATGATTGAGGGCATGAAAATAGAAAGAACACCTACGTCAGACTAATCTTTCTGAGTTTGTGCTTTCATGAATGTAAAGATAGATTCTGACGTCTGTGTTCTTGCCATGCAGAATATCTGACAAAAAAAAGAAGTGCTAATTTGAGTGACACTGCAAAAGCTTTTAAGATTTCCATGACTCCTCTCTGGGTTCATTTATGGATTTTAAATTTGCCGTCTGTGCCATCAAATGAACAATTTCTTTTAGAAGGAGCATTAATAACAGCAGAAAATTACCTTTTTTAAAGTGCAGCACTTGCTCGAATTCTTTTCTAAAGCCTTGAGAAATGACTACCTGCTGTTTTGCTCGGCACACGTTTCTGACGAGTTATTGGGAAATGCTGCATTCATATCTAGTTCATTTTTCACTGTGATGGTGttctataatgttattatttattattttacttgattattattgtttataatcaaTCAAGCAGTTATGTTACATCCttttatttcatgtgtttttaatgttttttttttaccttaagcAAATgtgcaaacctttttttttttttaattttcacattCCTATTCATTCTTTTTAAACTTTACAATAAATGCACATCACAGTGCCTGTAAACCTTTTGTTCACATTTTACTGcctaaagttttttatttataaaactatatGGGGCCACACGGTGGGTCCGtggttgccttacagcaagaaggtcgctggttcgagtcctggctgagccagttggcatttctctgtggagtttgcatgttctccatgttcatgtgggtttcctcctaggGTGCTCCGCCTTTCCCCACAGTGTaaagatatgcactataggtgaatataactgtgtgagtgtgagtgaatgtgtgtgtgtgtgtgtgtgagaatgtgtgtgtgtgtgtgtgtgtgtgaatgtgtgtgtgagaatgagtgtgtattgatatttcccagtactgggttttagctggaagggcatctgctgtgtaaaacatattcttgataagttggcggttcattccgttgtgtcgagccctgattaataaagggactaagctaaaaataaaatgaatgaatgtacaggtTTGTCTATGTTTAGAAGTACTAATCAAGTTTATGGGTATAGCAAGAGCTAGTATTGTTGGTGTTGTTTAGGGAGTAAAAtcttttaatcaaaataaacactaaaacaaacaaaataatttatataaatttacaaaacatataaaaaaaaattggtgggCCGCACGgaatctgcacatgcagaaaATTTCGTCTATTTGCTTAtgttaatgtgtgtaaatatacatttattctgTTTGATATTTATTTCAGTACAGTTTTTGATTAATATGCAGATGTTTAAAAGACTTGcatatgtacaatacagtttgtcttttagtagatgtattttgtttactttgtttatGTATATCTCAGTGCTTACCACAAGTTTGAAGTATACTTGCGGTGGAAGCACTAAAATTAATAAcaatgcgacaaacaaaacataattagattttta
>TCONS_00046310
GACGCAAGTCAAAGACCGACGAACAATTTCTGCGACTTGAAGTTCTCACATGTTCTGCTGTGTGAAGCAGCTAAAATCAGTCTGATGAAGCTGGAGTTGTCTCGAGTGGTCCAGGGATGCCGCCTGGGGGTTTTGACTGGTCTGGGGAAATTAGGACAACACTCACTAGAGGTGCCCGGCTGTCTCCTGTACACCCGCTGTGCCACTGTTCCACATCTGACCCAGGACACATTACTAACCTTGAGCGACCTGCCAGCCGTCACACAAGTGTCTGTGGATAGCCTTGCAGAGCACCAAGAAGTTCTGGAGGAGTTCAAAGAGGGTGTCAGAAAGTTTGCAGGTCTTCGTGATACTGTGATTTTCTGCTCTCTTCATGATTCTGCGAGCCCCAGTCCTGCCGGTCACGTCACCAACAAGACAGTGTCGGTGTGGGGCAGTGGTGGAAGGATAGAGCTGACGGCGGCTCGGTTCATGTCGATTCAGGCTGCCGTCCAGCCCGACTGCTATCAGAGCATGGCAGACGGAGAGACCTGGCAGGCCAATACATCTCGCAAGAGAGTCCGCAAAGCAGTGGACAGGACTCTGGCCCATCTGGATGAATGTCTGGTCCTGCACCAGAAAACTCAGGAATTAAAACATGCTGAGATATTTGGGGTTGTGGAAGGTGGAGATATTTTGGAAGAGAGGCTCCGCTCAGCACGGGAGACTGCTAAGCGTCCTGTGGGTGGATTTGTCCTGGATGGATTTCATTCTTCTGCCATGGACCAGGATGTGAGAGCTCAGCTGATTCAAGAAACTTCTGCAGAGCTTCCTCAGGAAAAACCCAGACTGGTGCTGGGAGTGGGCCGTCCTGATGAGGTCATTAGCTGTGTTGAAGCTGGAGTCGACCTGTTCGAGAGCTTTTTCCCCTTCCAGGTGACGGAGCGAGGCTGTGCCCTTTCATTCAACTACACTATTGATCCTGACCCGGAGACGGCAGGTACATCAGCCTCTACAGTGTTGGAATGCAATGGAGAAACACCTGAAGTCAAAAAGCCGAGTGCAAATGAAGATGTGGAAAATATGACGCCTTTTGAAATCAATCTCAAAGACAAAAGATATCGTGATGATTTCCGGCCGCTTGTGGAGGGCTGCGTTTGCTACTGCTGTCAGAAGCACATGAGAGCATATGTCCATCATTTACTGGTGACCAACGAGCTACTCGCCGGTGTTTTACTCATGCTGCACAACATGGCACATTACCTCGGCTTCTTCAAAGCGCTGCGGGACGCAATAACCAGCGACCGTCTGCAGGACTTTAAAAACACAGTTCTTCATCGCAGACAAGGTGATTGAAATGATTGAGGGCATGAAAATAGAAAGAACACCTACGTCAGACTAATCTTTCTGAGTTTGTGCTTTCATGAATGTAAAGATAGATTCTGACGTCTGTGTTCTTGCCATGCAGAATATCTGACAAAAAAAAGAAGTGCTAATTTGAGTGACACTGCAAAAGCTTTTAAGATTTCCATGACTCCTCTCTGGGTTCATTTATGGATTTTAAATTTGCCGTCTGTGCCATCAAATGAACAATTTCTTTTAGAAGGAGCATTAATAACAGCAGAAAATTACCTTTTTTAAAGTGCAGCACTTGCTCGAATTCTTTTCTAAAGCCTTGAGAAATGACTACCTGCTGTTTTGCTCGGCACACGTTTCTGACGAGTTATTGGGAAATGCTGCATTCATATCTAGTTCATTTTTCACTGTGATGGTGttctataatgttattatttattattttacttgattattattgtttataatcaaTCAAGCAGTTATGTTACATCCttttatttcatgtgtttttaatgttttttttttaccttaagcAAATgtgcaaacctttttttttttttaattttcacattCCTATTCATTCTTTTTAAACTTTACAATAAATGCACATCACAGTGCCTGTAAA
>TCONS_00046311
CTAAAATCAGTCTGATGAAGCTGGAGTTGTCTCGAGTGGTCCAGGGATGCCGCCTGGGGGTTTTGACTGGTCTGGGGAAATTAGGACAACACTCACTAGAGGTGCCCGGCTGTCTCCTGTACACCCGCTGTGCCACTGTTCCACATCTGACCCAGGACACATTACTAACCTTGAGCGACCTGCCAGCCGTCACACAAGTGTCTGTGGATAGCCTTGCAGAGCACCAAGAAGTTCTGGAGGAGTTCAAAGAGGGTGTCAGAAAGTTTGCAGGTCTTCGTGATACTGTGATTTTCTGCTCTCTTCATGATTCTGCGAGCCCCAGTCCTGCCGGTCACGTCACCAACAAGACAGTGTCGGTGTGGGGCAGTGGTGGAAGGATAGAGCTGACGGCGGCTCGGTTCATGTCGATTCAGGCTGCCGTCCAGCCCGACTGCTATCAGAGCATGGCAGACGGAGAGACCTGGCAGGCCAATACATCTCGCAAGAGAGTCCGCAAAGCAGTGGACAGGACTCTGGCCCATCTGGATGAATGTCTGGTCCTGCACCAGAAAACTCAGgatttatataaaatatgtgttaaagtcttaagaaaaaagttttttttttgagcgGATGCTCCATGGCGTGATATTTTACAGTTGAAAGAGGATGAACACCCTCCAAGGTGAACTTTGTACAAGTCACCATTAACTAAAAGACTCTAGGATCTGCAGTGGAGAATTTTGAATGGTGCaattgcaatgtttatttttctcaat

Function

symbol description
qtrt2 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in tRNA-guanine transglycosylation. Predicted to act upstream of or within tRNA modification. Predicted to be located in mitochondrion. Orthologous to human QTRT2 (queuine tRNA-ribosyltransferase accessory subunit 2).

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0101030 tRNA-guanine transglycosylation biological_process
GO:0008033 tRNA processing biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016763 transferase activity, transferring pentosyl groups molecular_function
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-060427-4 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in tRNA-guanine transglycosylation. Predicted to act upstream of or within tRNA modification. Predicted to be located in mitochondrion. Orthologous to human QTRT2 (queuine tRNA-ribosyltransferase accessory subunit 2).

Ensembl:

ensembl_id ENSDARG00000016093

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046309 False 3376 mRNA 0.41 8 21058779 21090584
TCONS_00046310 False 1960 mRNA 0.45 9 21059686 21090517
TCONS_00046311 True 758 mRNA 0.49 6 21078004 21090447

Neighbor

gene id symbol gene type direction distance location
XLOC_023415 kpna1 coding downstream 101998 20941360 ~ 20956781 (-)
XLOC_023413 CR450812.1 coding downstream 106107 20916128 ~ 20952672 (-)
XLOC_023414 ccdc58 coding downstream 131967 20922544 ~ 20926812 (-)
XLOC_023412 si:ch211-161h7.5 coding downstream 143729 20909922 ~ 20915050 (-)
XLOC_023411 si:ch211-161h7.4 coding downstream 150384 20892782 ~ 20908395 (-)
XLOC_023417 zdhhc23b coding upstream 32252 21122836 ~ 21131607 (-)
XLOC_023418 gramd1c coding upstream 41290 21131874 ~ 21150169 (-)
XLOC_023419 atp6v1ab coding upstream 63536 21154120 ~ 21172122 (-)
XLOC_023420 boc coding upstream 115659 21206243 ~ 21258945 (-)
XLOC_023421 spice1 coding upstream 240169 21330753 ~ 21369754 (-)
XLOC_023665 dre-mir-735 misc upstream 17087377 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 526966 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 871349 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 873754 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 995729 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1004522 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 872468 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 963225 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1218360 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1281402 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1788357 22878941 ~ 23218030 (-)

Expression


Co-expression Network