G416378


Basic Information

Item Value
gene id G416378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54859441 ~ 54859821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU471966
gctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggatgaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttggtcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatac

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU471966 True 381 lncRNA 0.44 1 54859441 54859821

Neighbor

gene id symbol gene type direction distance location
LOC110524062 LOC106613542 coding upstream 25599 54818613 ~ 54833842 (+)
LOC110524059 LOC106613985 coding upstream 143232 54702112 ~ 54716209 (+)
LOC118964715 NA coding upstream 222504 54623690 ~ 54636937 (+)
fpgt fpgt coding upstream 239104 54617524 ~ 54620337 (+)
LOC110524055 NA coding upstream 246298 54595497 ~ 54613143 (+)
LOC110524063 LOC106613544 coding downstream 8550 54868248 ~ 54876340 (+)
LOC110522972 LOC106613545 coding downstream 17042 54876863 ~ 54888523 (+)
LOC110524066 LOC106613547 coding downstream 66512 54926333 ~ 54935194 (+)
LOC110522873 LOC106613548 coding downstream 95426 54955247 ~ 54957290 (+)
LOC110524067 LOC106613550 coding downstream 172381 55032202 ~ 55041553 (+)
G416377 NA non-coding upstream 91 54859030 ~ 54859350 (+)
G416367 NA non-coding upstream 19861 54839362 ~ 54839580 (+)
G416362 NA non-coding upstream 21649 54835613 ~ 54837792 (+)
G416005 NA non-coding upstream 170559 54688582 ~ 54688882 (+)
G415946 NA non-coding upstream 246299 54590074 ~ 54613142 (+)
G416382 NA non-coding downstream 326 54860147 ~ 54860415 (+)
G416384 NA non-coding downstream 1930 54861751 ~ 54862192 (+)
G416438 NA non-coding downstream 29479 54889300 ~ 54889572 (+)
G416441 NA non-coding downstream 34312 54894133 ~ 54894347 (+)
mutyh mutyh other upstream 508826 54346481 ~ 54395448 (+)
G415809 NA other upstream 528961 54330080 ~ 54330480 (+)
G415808 NA other upstream 529661 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 676011 54177929 ~ 54183430 (+)
G416857 NA other downstream 464824 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1758069 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 1866364 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2064103 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2084017 56943838 ~ 56958165 (+)

Expression


Co-expression Network