G416428


Basic Information

Item Value
gene id G416428
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54869668 ~ 54870186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU472017
TCCACTTTTTCCAGCGCATACTTCACTATTTCGACACCTCAAATAGGTCTCCTATATATGCATCCCAGCAAGAAGTGATTCATTAACATTCATATTCTCCACTCCAATTTTAGTCAATTTCCTTTTTGTTCCAGTTTTCGATACTAGTGTTGTCCATTCATAACATTAATCTTCACAAACTTTGCCCGACGCGCTGCTTAATTCGAACTCATCATCCAATCCGCTGTCTTCGACTGACCCATTTCTTCTTCTTCGAGTGGTTTTCCAGCCGCCTGGACGCTTTGTTGCGTATTGCCAttgagtttctaaacccagaagCGCAACATTGCAAGACTTCCGGGAAACAGCTTGCGAAAATAGACCAAATATCCAAGCCGGTGTTTGAGGAGTAAATGAGAGAAGTGAACAAATATTTTTCTCGAAATCtgaaggcacaacctagattcgagcAAACGGCCTAAGTAGtcgaacatgttattactccaaccttgtgaaagtgacaaattgacacgttttcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472017 True 519 lncRNA 0.41 1 54869668 54870186

Neighbor

gene id symbol gene type direction distance location
slc44a5b LOC106613541 coding downstream 99382 54717326 ~ 54770286 (-)
erich3 erich3 coding downstream 207814 54640281 ~ 54661854 (-)
ssbp3b ssbp3 coding downstream 282478 54555051 ~ 54587190 (-)
LOC110524050 LOC106613535 coding downstream 325864 54378123 ~ 54543804 (-)
LOC110524048 NA coding downstream 541960 54326233 ~ 54327989 (-)
LOC110524065 elov7 coding upstream 28910 54899096 ~ 54924752 (-)
LOC118964528 NA coding upstream 127500 54997686 ~ 55005447 (-)
LOC110524068 LOC100286622 coding upstream 181538 55051724 ~ 55071938 (-)
LOC110524069 LOC106613551 coding upstream 201899 55072085 ~ 55073951 (-)
si:ch211-221n20.8 LOC106613553 coding upstream 232773 55102959 ~ 55122189 (-)
G416419 NA non-coding downstream 18986 54850233 ~ 54850682 (-)
G416418 NA non-coding downstream 19680 54847358 ~ 54849988 (-)
G416417 NA non-coding downstream 23122 54846084 ~ 54846546 (-)
G416408 NA non-coding downstream 32952 54835216 ~ 54836716 (-)
G416409 LOC106613542 non-coding downstream 35730 54832468 ~ 54833938 (-)
G416427 LOC106613544 non-coding upstream 3816 54874002 ~ 54876338 (-)
G416432 NA non-coding upstream 6270 54876456 ~ 54876692 (-)
G416481 NA non-coding upstream 17325 54887511 ~ 54888514 (-)
G416521 NA non-coding upstream 67090 54937276 ~ 54938242 (-)
G416530 NA non-coding upstream 81321 54951507 ~ 54952438 (-)
G416110 NA other downstream 483440 54363286 ~ 54392411 (-)
G415464 nexn other downstream 863995 54002448 ~ 54005673 (-)
G415420 NA other downstream 976762 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1250804 53617683 ~ 53618864 (-)
G412613 NA other downstream 3257106 51558378 ~ 51612562 (-)
LOC110524071 LOC106613554 other upstream 271129 55123617 ~ 55181458 (-)
G417527 NA other upstream 738649 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1838612 56703896 ~ 56711499 (-)
G418830 NA other upstream 1963840 56834026 ~ 56834595 (-)
G419603 NA other upstream 2740873 57611059 ~ 57611567 (-)

Expression


Co-expression Network