XLOC_023417 (zdhhc23b)


Basic Information

Item Value
gene id XLOC_023417
gene name zdhhc23b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21122836 ~ 21131607 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046312
GACACACAGCGGCGTACTGCTGCTGCTGTGTTTATGTCACGCTACTTCCTGGTGCTTTTCGAAGTAAACTTCATACATTTGGACTAGTTTACTTGCTATAGTTTTTTTCAGCCACTCTTCGATTCTGTGAAATGAATGATTAAGTTCCTATGGGGAAGAAGGCTAAAAGACTAGAAGGTTCCGAAATCCAACCTGAGGCAGCTGGCGAGCATGTTTACAGTACTAGAAAGGAAGTTCATCTCCTGCAATATGAATGTGTTGTGAGTGCTGAATGCGGTCTCTTTGTTTTATGAGTTGATGTCCATCATGAAGAAGAGATCTAGTCGAGCAGCAGATCCGGATGAACTTCTGTGCTGTTGTGAGTACATTGACCGTCATGGCAGTCGCAGTCACATGGTGGCATGTTGCTGTGACTGTGAGGATTTGGATGAGGCTTGTGACAGATGGATGAACAAGGAGCCTCAAAACCCAGACTCTGTGTCTCGGGCACTGGCCACCATCAATGACCGTCTGCGGGTGCCTTGGATATCCGGTGCCCGACAAATAGACGTATCACTCATCCCTCCTCTCATTCTACTGCCTGTTTTTTTGCACATTGCAGCTTTGCACTACCTGCTGGGAATTATAATGCTGACAGCCATGCCCATCACTGTCCTGTGGTATTATTTCTTCACTCACCGAAAGAAAGGACGCACTCTATTCTTCCTCGGCCTCGCTCTCTTCTCCCTCTTCTACATGTTCTACCTGTTCCTCACGCAGGTGGTTCCTCGAGGGGAAGTCACTGAGCTTCAGCTGGCTGTGGTGACGGCTGGTGTCGCTCTCACTGTTATTTTCCTTATGCTCACCAAAAGAGGGCCAGGTTTGGTCAGACCTCGTCCATCTGAGACTCACAGTACAGTGACGTATCACAGCACTCCGCCTGATGTAGATGGGGTATATCTGAATGGAGCCCGACATCAGGTGGTCATAGGCAGTCGGGTCGCTTCATCTGAACACACTGGTGAACCCGggacagaagaagaagaagaaggcgTTCAGAAGAGGAACTGGTGTGCTGTGTGTAAGGTGGTGCGTCCTCAGAGAGCCGGACACTGCAGGATCTGTGGGGTCTGTGTGCTGAGGCTGGATCATCACTGTGTCTGGATCAACAGTTGTGTTGGACTGGCCAATCACCGCACTTTCCTTCTGACGCTGCTCTTCTTCCTGCTGACGTCGATTTATGGCATCAGTCTGGTTCTGGCAAGTGTGTGTCCTGATCAGAGAGTCTTGACTGCTCTCTTCTACTGTCCCGATGTCTACAGTCAATACagTTCTGCGCTGTGCTTCACCTGTGCCTGGTACAGCAGTATCGTGACTGGAGGTTTGCTTCACCTGCTGCTCCTGCAGATCCTCAACATCAGCCTGAACGTGACAGAGCGAGAGGCACGTCTGGCCCTCAGAGAGAAGAGCGCTCAAAGGCGCCTCTGGGGTCTCATCGTCCACACCGGCCATTATTCCAGAGGCTTCTGGAGCAACTGGACTGAGTTCTTGACCATGACTGAAGATACACAGCCAGCAGGGCACAAAACAGAAGATTTGGTGTAGAAACTGAGCATTTATACAGTGACTAGCATAAATGAGAACATCATCTGTTAAACATTTCTTTGAGAATATGGaaatacagttttattaaacagttctatttattaacataaaaa

Function

symbol description
zdhhc23b Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC23 (zinc finger DHHC-type palmitoyltransferase 23).

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-13 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC23 (zinc finger DHHC-type palmitoyltransferase 23).

Ensembl:

ensembl_id ENSDARG00000003899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046312 True 1697 mRNA 0.49 5 21122836 21131607

Neighbor

gene id symbol gene type direction distance location
XLOC_023416 qtrt2 coding downstream 32252 21058779 ~ 21090584 (-)
XLOC_023415 kpna1 coding downstream 166055 20941360 ~ 20956781 (-)
XLOC_023413 CR450812.1 coding downstream 170164 20916128 ~ 20952672 (-)
XLOC_023414 ccdc58 coding downstream 196024 20922544 ~ 20926812 (-)
XLOC_023412 si:ch211-161h7.5 coding downstream 207786 20909922 ~ 20915050 (-)
XLOC_023418 gramd1c coding upstream 267 21131874 ~ 21150169 (-)
XLOC_023419 atp6v1ab coding upstream 22513 21154120 ~ 21172122 (-)
XLOC_023420 boc coding upstream 74636 21206243 ~ 21258945 (-)
XLOC_023421 spice1 coding upstream 199146 21330753 ~ 21369754 (-)
XLOC_023422 atp8a2 coding upstream 239672 21371279 ~ 21512425 (-)
XLOC_023665 dre-mir-735 misc upstream 17046354 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 591023 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 935406 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 937811 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1059786 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1068579 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 831445 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 922202 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1177337 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1240379 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1747334 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04336914_04342114 NA coding CI01000018 null 4336589 ~ 4342114 (-)
bowfin (Amia calva) AMCG00016517 NA coding CM030122.1 CM030122.1 24029390 ~ 24039800 (-)