G416733


Basic Information

Item Value
gene id G416733
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55094943 ~ 55097297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU472361
ctacacacaatacctcataatgactaagcaaaaacaggtgtATAGAacatttagcaaatttattaaaaataacgACACACAAGCACAACCCCATCAGTGAAACAAATCTATCATTATGGTTAACCGGACCATCTAGTTCATTttaaagtccaaaaatggatgtaacaATTCCAGATGACCCTTTTTTTAAAAGCAATCCCTGATAgaaagtgaacaagtgcacatttCAGAGAGTATAGTGACATAACTCCATGTGATTTAAGGCTATGGTGTGTATAAAACCTAAGCACCATAGTACTTAGCTATACTTTAACAAAATAAAatcttcatatatatatatatatatatgtaaaatcAATGAATGCATCGAATTGCTGAGCGATTGCAGTGAAAATAATCAGGAGGTAAAAGCAGAAGTTAGGTTTCATTAGTCACCTCAATGTCACTCTTAACCTTATACTACCACAGGCCAGCACCCCCGGCTATAACAGTCGAAGGGAAGACTTCTGCTGTCTCATTATATTAGCCTGCATTAATTACATGCTACAATATTGATGCATCATCAATAACAAATCAATGAAATAAGTTGGACCACTGATtaaagataaataaaaaaaacacaataacCCTAATTAAATAAATATGACTATTATGTTCACCTGGGCCGTGTTCTGTTGAGCACAATGTAGCAAAAATGTTAGGCAACAGAATAATTGAGCATTTTTTTATGGAACAAGTTCAGGTAATATCAACATTTTTTTAATcctactgtttaaaaaaaaataaacaaagatTCTGTTTTGTGCCAATTGAACACACACCTAACTAAAAGTATATTTTTTTGAAAACCCAATTCTAAACATCTGAAATACCTGTTAAGATGCCTCGCTTTCAAATAACTATTGCATgaaagtaacacaacaaaaaaagGGTATTTTAAAAAGAGTAGAAAAAGATGTCATACACATTCATTATTTATATATTGCCAGTCATTTCAGGAATTTAAATTGCATTTCTAACGGAAACATTCTTTGTCCAATTCAACAGAAAATAAGTAAACAGAAATTGACCCGGAGTTGTTGTTGTAACTTCAGATCAAAACAAATACCTCAAAGTGGTATTGAGAGCAAATCATATGATTATTTTCTCATATTAGTATTTTCTTACAATCAGTCTTTTGTTAGTCTGTACCACTACTGCAAAATGTTTAAATCAATAATACtgtaaatgtacaaaaaaaagttACATATGACTCCTAAAAACATTCTGATGATTTAAATCATAGAATAGCAATGAGTAGGTTACTTTGGAAGTTGAAAACCTGACATTTGGACTCACTGACATTGAAATGGCCTCATTGCTTTTGAGAGGAAAGAGTTATTCAAGACaaaataaatatgtatttattttctatCATTTGTACCTTGCATCTGGGAAGTTGCCTGGATGTGCTTTCACTACTATCAAAATTAtttgaattgtaaaaaaaaaaaaaaaggctaaaTGTTAAGAGTaacttgaaataaataaatgtgacaagACATGTAAAACTAAGATGCGTTTTTGAGTAAAGACAATACTCATGGAGTGTGCCTGCCTATTTCTTTCTATTCTGTATTATTGTGTGAGGAAACGTATATCAAGCATCTCAAATCATATCAAACATCTTTCAATAGGATGCCTATTGGCAAGGTACTTCAAAAACTTTGATAGTCATTCAGAGCAACAGAAAATAATCATTTGCAACCACATTACATCCTTATCGCAATAAAATATATTAACTATACATCTTGATACTTGCAAAATATACATCCACAACAACGTTCTTTCTCAACATAATTCAACTGTTGTATAAGATACAAATAAAAGCAAACAAAATAACTGAATAAGAGTCCAGTAACACAGGCAGGACTGTTATACACACACCTTCAAGGTACAATCTGaaatgtctgtctgctgtggcCAGACAAAATGCAAACAATCTATGCTCAaaagcacacgcacacaaacttcAATCTCAGAAAAACCCATCCCCTTACTCCCACCAGGTCAGCACAAAAAAAATCACTATAGATCTTTAACCTCACGACCTCTAACCTCGCACTAGACAGAAGCCAGTGTATGAAACCACCCTGATTCTGCAAAATAGAGGGATTTATTTAGACTGTCATGATGTTGACGGAACATGAAAGCGTAGCCTCTCTGAGGTCTGCGGATGGGGTAGATGGTGGACGGTGAGCCCTTCTCATGTGGAGGATGGGGCCATGTGTCCGTGAACACGGAAGCGGTACACGCACGTGTACTTCAGGTGACCCCAGTTACTCAGAACGCGCAG

Function

NR:

description
SUN domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472361 True 2335 lncRNA 0.34 2 55094943 55097297

Neighbor

gene id symbol gene type direction distance location
LOC110524069 LOC106613551 coding downstream 20992 55072085 ~ 55073951 (-)
LOC110524068 LOC100286622 coding downstream 23005 55051724 ~ 55071938 (-)
LOC118964528 NA coding downstream 89496 54997686 ~ 55005447 (-)
LOC110524065 elov7 coding downstream 170191 54899096 ~ 54924752 (-)
slc44a5b LOC106613541 coding downstream 324657 54717326 ~ 54770286 (-)
si:ch211-221n20.8 LOC106613553 coding upstream 5662 55102959 ~ 55122189 (-)
LOC110524071 LOC106613554 coding upstream 26320 55123617 ~ 55181458 (-)
LOC110524072 LOC106613556 coding upstream 85317 55182614 ~ 55236572 (-)
LOC118964623 NA coding upstream 150836 55248133 ~ 55250837 (-)
LOC110522973 patj coding upstream 171149 55268446 ~ 55489840 (-)
G416712 NA non-coding downstream 27833 55045989 ~ 55067110 (-)
G416709 NA non-coding downstream 51867 55042831 ~ 55043076 (-)
G416696 NA non-coding downstream 76384 55018355 ~ 55018559 (-)
G416673 NA non-coding downstream 113700 54980433 ~ 54981243 (-)
G416744 NA non-coding upstream 15460 55112757 ~ 55113201 (-)
G416761 NA non-coding upstream 50782 55148079 ~ 55148352 (-)
G416777 NA non-coding upstream 69156 55166453 ~ 55166685 (-)
G416778 NA non-coding upstream 69868 55167165 ~ 55167470 (-)
G416110 NA other downstream 708715 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1089270 54002448 ~ 54005673 (-)
G415420 NA other downstream 1202037 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1476079 53617683 ~ 53618864 (-)
G412613 NA other downstream 3482381 51558378 ~ 51612562 (-)
G417527 NA other upstream 511538 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1611501 56703896 ~ 56711499 (-)
G418830 NA other upstream 1736729 56834026 ~ 56834595 (-)
G419603 NA other upstream 2513762 57611059 ~ 57611567 (-)

Expression


Co-expression Network