XLOC_023419 (atp6v1ab)


Basic Information

Item Value
gene id XLOC_023419
gene name atp6v1ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21154120 ~ 21172122 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046317
GTTGACCTTTGACCCTGCATAGGGAGACAGGCTGTGACGTCATCTCACAACTGGACTGGACCGACTGAATGAAGTCAGCTGACTTTTCATTGCTGCTCACGTTTCATCTCACTAAAGGACCCAGACTGTCTCATCATCTGAGACACATTAAAAATGGACTTCTCCAAGTTGGCCAAAATCCGAGATGAGGAGCGGGAGGGACAATTTGGATATGTGCATGGTGTATCTGGACCTGTGGTGACAGCCTCCAGTATGGCAGGAGCTGCTATGTACGAGCTGGTGCGAGTGGGTCACAGTGAGCTTGTGGGAGAGATCATTAGACTGGAGGGTGATATGGCCACCATTCAGGTCTATGAGGAGACATCTGGTGTGTCAGTCGGAGACCCTGTCCTGCGCACAGGGAAGCCCCTCTCTGTGGAGTTAGGGCCAGGAATCATGGGCTCCATCTTTGATGGTATTCAGCGTCCCCTTAAAGACATCAACGACCTAACTCAAAGCATCTACATTCCCAGGGGAGTCAACATTGGTGCTCTTAACCGTGATCTCAAATGGGAGTTCACTCCATCAAAGAATTTGCGTGTTGGCAGTCACATCACTGGAGGTGATATTTATGGGAACGTGTTCGAAAACTCTCTCATTAAACATAAAATCATGTTACCCCCGAAAAGCAGAGGAACCGTCACATACGTCGCACCACCTGGAAACTATGATGTCTCGGATGTGGTGTTGGAGCTGGAGTTTGAGGGGGTGAAAGAGAAGTTCACTATGATGCAGGTGTGGCCGGTGCGTCAGGTGCGTCCCGTCACAGAGAAACTTCCTGCAAATCACCCTCTGCTGACTGGACAGAGAGTCCTGGATGCCCTCTTTCCATGTGTGCAAGGAGGAACCACAGCAATCCCCGGTGCTTTCGGATGTGGTAAAACCGTGATTTCTCAGTCTCTGTCTAAGTACTCTAACAGTGATGTCATCATCTATGTGGGCTGTGGAGAACGAGGAAATGAAATGTCTGAAGTACTTCGAGATTTTCCTGAGCTGACCATGGAAGTGGGAGGTAAGGTGGAGAGCATCATGAAGAGAACAGCTTTGGTTGCAAACACATCCAACATGCCTGTGGCTGCCAGAGAAGCTTCTATTTACACAGGAATCACgctgtctgagtatttcagagacATGGGCTACAATGTGAGCATGATGGCTGACTCTACGTCTCGATGGGCAGAGGCTTTGAGAGAGATCTCTGGTCGTCTGGCTGAGATGCCTGCTGACAGCGGTTATCCTGCATATCTCGGAGCACGTCTGGCTTCGTTTTATGAGCGTGCCGGAAGAGTTAAATGTCTAGGGAACCCAGAGAGAGAGGGCAGTGTCAGCATTGTGGGAGCTGTGTCTCCCCCTGGTGGTGATTTCTCAGATCCTGTGACCTCTGCTACACTTGGTATTGTACAAGTGTTTTGGGGTCTGGACAAAAAGCTGGCTCAGAGGAAGCACTTCCCCTCAGTGAACTGGCTAATCAGTTACAGTAAGTACACACGAGCGCTGGACGAGTACTATGATAAACACTTCCCTGAGTTTGTGCCGCTGCGCACTAAAGCCAAAGAGATCCTGCAGGAAGAAGAGGACCTGGCTGAGATTGTGCAGCTCGTGGGGAAGGCTTCATTGGCTGAAACGGATAAGATCACCCTGGAAGTTGCCAAGCTGATCAAGGATGATTTCTTGCAACAAAATGGATACACACCGTATGACAGgtTCTGTCCTTTCTATAAGACGGTTGGTGTCTTGTCCAACATGATTGCATTTTATGATATGGCTCGTCATGCCGTAGAGACCACGGCACAGAGCGACAATAAGATCACCTGGGCCATGATCAGAGAGCACATGGGAGAAATCCTCTACAGGATCAGCTCCATGAAGTTTAAGGACCCTGTGAAAGAGGGTGAGGAGAAGATTAAAGCTGATTACGCTCAGCTCCTTGAAGACATGCAAAACGCTTTCCGTACACTGGAAGACTGAGAGCCTCGTCTTAACCATCATTCTCAGGGCAGGGCAGCAGAAACCACCCTCCTCACAGACAGCCCTGTCCTTTACCTCCATATACTACATTCCACTGCTTTGTATTCATCTTGTGCTGTTTTAGATGCTCTAGTGTTCTTGATGTGTCTCCAAATACCATTTCTTTTGTACGTGTATATGCATTTGTGAATATGTGCAATCTCTATTATCCTCCTCAAAGCCTCTGCTCTGCCCTTTATACTTTACTGATCATCATGTCCGTAAATATAGATGTTATTAAATAATTTGATGTAATTATTGCTCTATTTTTATCTGTACAGAAGATTGAAAGACTTCAGAAGTTGACTATATTTACTGCCAGCATATTTACAGTTCTAATGGTTGCCAATATAATTATGTATACAAATATGTGTTGTTTTTTGGTACGGCTGTTTATTGCAGTATTGTCCTGTACATTTCGTTGAGGATGCAGCATATTTGCTCTTCATTGCTCACTTGAAAACGTGTCAAGAGTCGtggaaaaacagaaataaatattgtttaattta

Function

symbol description
atp6v1ab Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ATP metabolic process and ion transport. Predicted to be located in apical plasma membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including integument ionocyte; lateral line ganglion; neural crest; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93. Orthologous to human ATP6V1A (ATPase H+ transporting V1 subunit A).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9529 Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ATP metabolic process and ion transport. Predicted to be located in apical plasma membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including integument ionocyte; lateral line ganglion; neural crest; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93. Orthologous to human ATP6V1A (ATPase H+ transporting V1 subunit A).

Ensembl:

ensembl_id ENSDARG00000076318

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046317 True 2555 mRNA 0.47 15 21154120 21172122

Neighbor

gene id symbol gene type direction distance location
XLOC_023418 gramd1c coding downstream 3951 21131874 ~ 21150169 (-)
XLOC_023417 zdhhc23b coding downstream 22513 21122836 ~ 21131607 (-)
XLOC_023416 qtrt2 coding downstream 63536 21058779 ~ 21090584 (-)
XLOC_023415 kpna1 coding downstream 197339 20941360 ~ 20956781 (-)
XLOC_023413 CR450812.1 coding downstream 201448 20916128 ~ 20952672 (-)
XLOC_023420 boc coding upstream 34121 21206243 ~ 21258945 (-)
XLOC_023421 spice1 coding upstream 158631 21330753 ~ 21369754 (-)
XLOC_023422 atp8a2 coding upstream 199157 21371279 ~ 21512425 (-)
XLOC_023423 gpr12 coding upstream 411952 21584074 ~ 21588914 (-)
XLOC_023424 usp12a coding upstream 428198 21600320 ~ 21620316 (-)
XLOC_023665 dre-mir-735 misc upstream 17005839 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 622307 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 966690 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 969095 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1091070 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1099863 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 790930 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 881687 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1136822 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1199864 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1706819 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding CI01000018 null 4360619 ~ 4364887 (-)