G416791


Basic Information

Item Value
gene id G416791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55180492 ~ 55182626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU472445
ACAAACTTTATTTTAAAGTTGAACTGTACGTTTTAccagtatcataaccattatAACAGTGAGTGCATAGATAGAGAATATGATGGTGGCTGACTCttgaaatacgtttttttttaaataaaatacataggATATCTTCCCCAGCACAACCACCATCAAACAGACTTGGTTCAAAACACAATTCCTTGTGACTTTGTAAATCATTATTATTGTTTTTCATTACAAAAAGTGCAAAACTGTAGAGAAAATATTAGGCTTTTTGTATACAAATTGCACAAATTTAGACCACTCATAAAATCTTAGAAATGGGAAACAGTTCTCTACAAAAGCAGCATCCGATTTAGCCCTCGACTCTttggtgtagggtgaagttgcccctagaatCTGATCTTGGGTCAGTATTGCATTTTCCACTCTAATGGTTATCGTTAGGATGGGGGAAAACCCCACCCCGGACCTTGCTTCAGTCGTGAAAAACATTGGTAAGCTCCTTGAATAGGCAGTATTGTAAACAAGGGTGGTCACGCCTTATTACTATAGCGACTAATAGAGAAAGACAACGATCAACTTAGATtagtgacaacaacaaaaaacacaagaTCTAGAATGTATGGCTATAACAAAATTCTAAACTCCCTTACAAAGATATATTACAAAATCATATTCCTATGATGGTATATCATATATATAGGCCTGCTATTATAAACAGTTCAGATAGAATCCAGAAAGACCTTACACAAACATAAGCTTGCCATGGTACACTACACCAGCAATTCTCAACTGGTGGGTCGCAACCCAAGGTTTTGAACGCGTCTGGGgtgtatttttttaaaacaaatatttataccagtcaaaagggtgcaaagctgtcatcaagacaaaggggggctactttgtagaatctcaaatataaaatatattttgatttgttgaacacttttttagttactacatgattccatatgtgtaatttcatgtcttcattattattctacaatgtagaaaatagtacaaactaagaaaaaccctggaataagtaggtgtgtccaaactattgactggtactgtgtgtatatatatatatggaaaaaATACTCCAGTCTGAACTTAAATCAGGTAGGtgtgtagaaattataatgaATTAAAATTTTAAAATAATTTAATCTCTGAAAAATCTTTTTTCAATCACAGTATTTCAATATATAACTATTAGCAGTGCAATTTTTGGTTGATTTTGTCATCTCAAACCAGTGAGTTTAAGATTCTTCATCAAGAATATGGTCCAAATTGAATTCATGACAATGAAAGAGGTGGGAATGTTTTTCCCTTGTCATATAATTTCTACATTTACTACTAATATTGCATTAAACATGGTTTTTGGCACATTTTGCAACTGAGACAACCTGGTTCAATTTGGGGCCCGaggcaaaaccagttgagaaccactccactccactgtgCCCTGAGGTGCTCCTTGAGGATAGCCTTTCGGCTAAGTATTATTCCATGAGGATAGCCTATGGCTAAGTATTATTCCATGAGGATAGCCTATAGCTAAGCATTATTCCATGAGGATAGCCTATGGCTAAGCATTATTCCATGAGGATAGCCTATGGCTAAGCATTATTCCATGAGGATAGCCTATGGCTAAGCATTATTCCTTGAGGATAGCCTTTCAGCTAAGTATTATTCCATGAGGATAGCCTATGGCTAAGCATTATTCCTTGAGGAGAGCCTAAACATTAAAGAAGTAGAAGCACTGTATACAACAGTGGATTCTTAAAGATGCTGAGTATAGCATGAACTTGCTATCCAAAACACATGTCAAATCTGCACACGTGAAAAGACAATGTGCCATCTTGGCACTTAACTTTTCGTTTTCACAGTGCAGTTTTTATGTGTCTTGTAATGGAAACATAACTTTGAAAAAATTATGTTCAAAGGCAAGGATTGGCACGTGCTTTGTCAGTGAGTGAAATTGAGCTTGGTAATAGATCATAATAGTTGACAGTGTGCtgcaataatataatatagtgtccTTATAAACAATAGTATTATGTTAAAATAAGAGAAGACATTGTCTTTTAAACAAAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472445 True 2095 lncRNA 0.35 2 55180492 55182626

Neighbor

gene id symbol gene type direction distance location
LOC118964621 LOC106613552 coding upstream 83235 55082899 ~ 55097257 (+)
LOC110524067 LOC106613550 coding upstream 138939 55032202 ~ 55041553 (+)
LOC110522873 LOC106613548 coding upstream 223202 54955247 ~ 54957290 (+)
LOC110524066 LOC106613547 coding upstream 245298 54926333 ~ 54935194 (+)
LOC110522972 LOC106613545 coding upstream 291969 54876863 ~ 54888523 (+)
LOC110524073 LOC106613986 coding downstream 55241 55237867 ~ 55239661 (+)
LOC110524074 tal1 coding downstream 67251 55242498 ~ 55255113 (+)
LOC110524076 LOC106613559 coding downstream 75048 55257674 ~ 55268360 (+)
LOC110524077 tm2d1 coding downstream 305194 55487820 ~ 55504741 (+)
LOC110522974 LOC106613563 coding downstream 585350 55767976 ~ 55826824 (+)
G416790 NA non-coding upstream 1296 55178937 ~ 55179196 (+)
G416789 NA non-coding upstream 1667 55178558 ~ 55178825 (+)
G416616 NA non-coding upstream 106744 55072085 ~ 55073748 (+)
G416589 NA non-coding upstream 158966 55021314 ~ 55021526 (+)
G416560 NA non-coding upstream 162298 54974659 ~ 55018194 (+)
G416821 NA non-coding downstream 35128 55217754 ~ 55218712 (+)
G416823 NA non-coding downstream 85826 55268452 ~ 55271810 (+)
G416859 NA non-coding downstream 92065 55274691 ~ 55317707 (+)
G415946 NA other upstream 567350 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 829877 54346481 ~ 54395448 (+)
G415809 NA other upstream 850012 54330080 ~ 54330480 (+)
G415808 NA other upstream 850712 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 997062 54177929 ~ 54183430 (+)
G416857 NA other downstream 142019 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1435264 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 1543559 56726185 ~ 56729821 (+)
G418251 rtca other downstream 1741298 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 1761212 56943838 ~ 56958165 (+)

Expression


Co-expression Network