G416823


Basic Information

Item Value
gene id G416823
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55268452 ~ 55271810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU472480
GTGGAAATGATTGTGCTCCCCTTGTATTTAATAAAACATCATCAAACAATTAGTCAGAAATCACGAAATGCATCAGTGTATGACCACAGTCAGTAGGCTTAACACATTTCAAAAGATGAGACTTGCATTTGTGATCATAGACAATATATTTTTCTATAGATATACTGTGTAGCCACACGTCATTACAGCAGAGTTTGTCACACATCGATATATAGGAAGGGTGGATTGTTTCTTTGGATTTGAAAATGCGTTTCCATCGATCAATGACGTGAAGAAAGACGTTTTCTGTGGCGCTTCGGACGAGCGCTGAGTTCAATGGCAATATAGACGGAACTATTGGGCGTGACGGAATCATCATTAGTCCAACGAacacgtgcacaaacacacagcctATTGCCGACTGACACGCATAGGACAAAGTCAGACAAAATCTAAAAGTCTAGAGTAGATGGAGAGATCACAGcatgagagagaggaaaataaataGGTAGCAGTGAGTTTAAAATGAATCTCTTTAAAGGGATCGGGCATTAAGACTTATAGAAATAGTCTCTCACAGAAATAAGACTGATGtatgatgaacacacacacacataacaatcTACTCTGGCACATCAGCGACTCACGGCAGAGCAGGAGTCAGTCCCCTTAATAGGCCGACATCCCCTAAATCCTAGGACCCCTAACAAGTATTTAGGACGCACACCAGATTGCACTTTTACTGAGACAGGCACGACGCGAGAGTTAATATGCAGGGTTTTCCTTAGTGTTAACCGGGGTCATATTCATTATGGCACAACGTAGCTAAATGGTTTGCAAGTGTTTTTGTATTGGGCAaattcaggtagtccctccttTTTTCAGTCTGCTTTCTCCCGTTTGGGACCTAATGAATacaactgtggggggggggggggggggggggttcagatcATTTGGCAACACTGTGTACTAATAACCGGTCTCACATCTGCATACGCAAGGCAAAACTCCTTCGCGACACGCACAAAAGCTTACTGCTCTTAGCAGGACTACACAACATACTGCAGAGTGATAAACCAGACAGTAGTTGTTGGCCTTGATAACTGTGTTTGAATGGCTCCAGAGGGTGCTGTGTCATGCTATGAAGTGTTATAGAAGTACACGGCAGGTTACCAGTTATTTCAGCATAAACGCAATTGATTCATTTCGTTGACCACACTTATAGACTAGAGCAGGGTTATTCAACTCTGAGCCtacgaggtctggagcctgctgcttttctgttctacctgatcattacaTTTCACCCAcctcccaggtctaaatcagacccctGATTAGAGGGCAACAATGCAAGAAAACACAGTGGAACTagcttcaaggtccagagttgtGTTTGAGGGGACTAGACTGTTGAATGTACTACCTTTGCGTAAGAGTATGACACCACGAGTTTAAATCGTGTGCGGGCAATGAGGAATGAGAAGATGTGCGTCAACCTGACAGTGACTCACTAGCCtactgtgtgtgggtgtttatATACAGAATGTGTGTGTCTAAATGACCTGTTCCAGTCTAGTGTGTCGCAGCCCCGTTCCCTGCCGAGACCATTCGCCCTCACAGTTTGCACATTAGCAGCAAATTAAGCTGACATCTCTAACAGCTATCCAGTGTCTCCCGATCAGGGAGATGCTAAGCTAACGCTAGGCTAACGTTGAAGAGACCTCAACCAACTGAACCTCTCATATTGTTCTACCAGTGTTCTATGTAGGAAGCACGGGTGCGATCACACAAATAAAAGCTGAATGGCACAGACTGTAAAGCTTCCCTGTGATTCCTTGCTGTATAATATCCAATCATTTGCCATATTAAGAAGTGGTGTGTATCCAGTCAGCACAGCGATTGGAGCACCCTCAAAGTGAGGCTCCTAAGATGGCACACAGGAAGTTAGGTGTCACTACTTCCTGCAGCCCCCCAGATTACAGTCCTCTTATTTCTCATGGTTCACTTGAGGGCACAGCTGAACGAGGTGTGGCACACATGTTCTCTACATCTCTACAGGGCAGGGCTCTCCTTGGCAGTGCCATCTAGTGAGCGAATCCTTCCAGAACCAATGCCCCCTTTCTCGTTAATGGGCTGTTTATAAGGGTGAAGATGGGCATCAGATGTTGGCCAACTCAACGGAACAGAgtcttgttttttgttttttgcacGTTGGAAAGTTGAAACCAGTTCAACCCCATAATGGTCGCTTTGCCAGTGGgggtataagtgtgtgtgtgagctaggAGAGGACTTCCAGAGTGACGGCCCCCTTCTGTCTCTTCAGTATGGCCACGGCCAGTTCGTGGGTGGCCCCCTCCAGACTCTCTCCGTTTACTGACAGAATCTGGTCACCCCTCTTCAGACGCCCGTCCACCGCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472480 True 2406 lncRNA 0.46 2 55268452 55271810

Neighbor

gene id symbol gene type direction distance location
LOC110524076 LOC106613559 coding upstream 92 55257674 ~ 55268360 (+)
LOC110524074 tal1 coding upstream 13339 55242498 ~ 55255113 (+)
LOC110524073 LOC106613986 coding upstream 28791 55237867 ~ 55239661 (+)
LOC118964621 LOC106613552 coding upstream 171195 55082899 ~ 55097257 (+)
LOC110524067 LOC106613550 coding upstream 226899 55032202 ~ 55041553 (+)
LOC110524077 tm2d1 coding downstream 216010 55487820 ~ 55504741 (+)
LOC110522974 LOC106613563 coding downstream 496166 55767976 ~ 55826824 (+)
LOC110524079 atpaf1 coding downstream 555397 55827207 ~ 55838164 (+)
LOC110524081 rab3b coding downstream 566750 55838512 ~ 55848072 (+)
LOC110524082 LOC106613566 coding downstream 577403 55849213 ~ 55864861 (+)
G416821 NA non-coding upstream 49740 55217754 ~ 55218712 (+)
G416791 NA non-coding upstream 85826 55180492 ~ 55182626 (+)
G416790 NA non-coding upstream 89256 55178937 ~ 55179196 (+)
G416859 NA non-coding downstream 2881 55274691 ~ 55317707 (+)
G416856 NA non-coding downstream 15865 55287675 ~ 55318979 (+)
G416893 NA non-coding downstream 85579 55357389 ~ 55361834 (+)
G416945 NA non-coding downstream 145321 55417131 ~ 55417724 (+)
G416941 patj non-coding downstream 156401 55428211 ~ 55452917 (+)
G415946 NA other upstream 655310 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 917837 54346481 ~ 54395448 (+)
G415809 NA other upstream 937972 54330080 ~ 54330480 (+)
G415808 NA other upstream 938672 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 1085022 54177929 ~ 54183430 (+)
G416857 NA other downstream 52835 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1346080 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 1454375 56726185 ~ 56729821 (+)
G418251 rtca other downstream 1652114 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 1672028 56943838 ~ 56958165 (+)

Expression


Co-expression Network