G416859


Basic Information

Item Value
gene id G416859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55274691 ~ 55317707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU472521
CTCTGGCtcccctgtctgtgtgtctgggctGTTGGGAAGGCTGGTGCTAGTGGACATACTCTCCACCTGACTGGCTATGGCACTGATGTTGGTGTCAGCGAtcacctgcaaacacacacaaattagTATGCACAAATGACATTAGAATTCACAGGGTATAATctgtgtgagcttgtgtgtgggtgtgggcgTTATAGACGAGGATGAGTCACAGGGTACATGTGATGTGGGTTTCAAATggaattcatttttattttttatgtactACAGATATGGCTCCTGGTTCAAAGTCTTGGTTCAATGTCAGAGAGAGCCACACAAAGCATAATGTGGTTATCATTGATCATtttcccctttccccctctctctctcactcactctctccaacTTTGGCAAGGAAAACAGCTTCGTTAGGTTTTAGTCCTCTCGTTTAACAAAATAGTCAGCCAGCCAACTACGGCGGTCAGCATCCGTTCATTTCCATATTTAAATCAAGCGGGAGGCAATTAAAAAtatgaaaaacaacaaacaaaggcTAATTAACAGACGACTTGTTGGCTGTGCGAAGGAACATTAGTGGAACGCTCCCCAGCCGTCGCCTGCACTAATCTTACTGATACCTTCtttctggagaaagagagaaggagacagagagagaaaggggaaggagtgagagcaggagagagaaaggggaaggagtgaaaaagggagcgggagagagagaaaggagtgagaaagagagcgggagagagagtgagaaaggggaaggagtgagagagcaggagagagagagaaaggggaaggagtgaaaaagggagcgggagagagagagagaaaggagtgagaaagagagcgggagagagagaaaggggaaggagtgaaaaagagcgggagagagagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggggaaggagtgagaaagggagcgggagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcaggagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaggaaggagtgaaaaagagagcgggagagagagaggaaggagtgaaaaagagagcaggagagagagagagaggaaggagtgaaaaagagagcgggagagagagagagggagtgaaaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcaggagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaggaaggagtgaaaaagagagcgggagagagagagagaggaaggagtgaaaaagagagcaggagagagagagagaggaaggagtgaaaaagagagcgggagagagagagagggagtgaaaaagagagcgggagagagagagagagaggaaggagtgaaaaagagagcgagagagagagagagaggaaggagtgaaaaagagagcgggagagagagagaggaaggagtgaaaaagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggagtgaaaaaagcaggagagcgggagagagagagaaaggagtgagagcgggagagagagagagagagaaaggagtgagaaagagagcgggagagagagagagaaaggagtgagaaagagagcggcagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagcgagaaaggggaaggagtgagaaagagagcgggagagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagagaaaggagtgaaaaagagagcgggagagagagagagagaggaaggagtgaaacagagagcgggagagagagagaggaaggagtgaaaaagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggagtgaaaaaaagcaggagagcgggagagagagagaaaggagtgagagcgggagagagagagagagaaaggagtgagaaagagagcggcagagagagagagaaaggggaaggagtgagaacgagagcgggagagagagagaaaggagtgagagagcgggagagagagagagaaaggagtgagaaagagagcgagagagagagaaaggggaaggagtgagagcgggagagagagagagagagaaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagag
>TU472522
CTCTGGCtcccctgtctgtgtgtctgggctGTTGGGAAGGCTGGTGCTAGTGGACATACTCTCCACCTGACTGGCTATGGCACTGATGTTGGTGTCAGCGAtcacctgcaaacacacacaaattagTATGCACAAATGACATTAGAATTCACAGGGTATAATctgtgtgagcttgtgtgtgggtgtgggcgTTATAGACGAGGATGAGTCACAGGGTACATGTGATGTGGGTTTCAAATggaattcatttttattttttatgtactACAGATATGGCTCCTGGTTCAAAGTCTTGGTTCAATGTCAGAGAGAGCCACACAAAGCATAATGTGGTTATCATTGATCATtttcccctttccccctctctctctcactcactctctccaacTTTGGCAAGGAAAACAGCTTCGTTAGGTTTTAGTCCTCTCGTTTAACAAAATAGTCAGCCAGCCAACTACGGCGGTCAGCATCCGTTCATTTCCATATTTAAATCAAGCGGGAGGCAATTAAAAAtatgaaaaacaacaaacaaaggcTAATTAACAGACGACTTGTTGGCTGTGCGAAGGAACATTAGTGGAACGCTCCCCAGCCGTCGCCTGCACTAATCTTACTGATACCTTCtttctggagaaagagagaaggagacagagagagaaaggggaaggagtgagagcaggagagagaaaggggaaggagtgaaaaagggagcgggagagagagaaaggagtgagaaagagagcgggagagagagtgagaaaggggaaggagtgagagagcaggagagagagagaaaggggaaggagtgaaaaagggagcgggagagagagagagaaaggagtgagaaagagagcgggagagagagaaaggggaaggagtgaaaaagagcgggagagagagagagagagaaaggggaaggagtgaaaaagagcgggagagagagaaaggggaaggagtgagaaagggagcgggagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagagaaaggggaaggagtgagaaagagcgggagagagagagagaaaggcgaaggagtgagaaagagagcgggagagagagag
>TU472523
CTCTGGCtcccctgtctgtgtgtctgggctGTTGGGAAGGCTGGTGCTAGTGGACATACTCTCCACCTGACTGGCTATGGCACTGATGTTGGTGTCAGCGAtcacctgcaaacacacacaaattagTATGCACAAATGACATTAGAATTCACAGGGTATAATctgtgtgagcttgtgtgtgggtgtgggcgTTATAGACGAGGATGAGTCACAGGGTACATGTGATGTGGGTTTCAAATggaattcatttttattttttatgtactACAGATATGGCTCCTGGTTCAAAGTCTTGGTTCAATGTCAGAGAGAGCCACACAAAGCATAATGTGGTTATCATTGATCATtttcccctttccccctctctctctcactcactctctccaacTTTGGCAAGGAAAACAGCTTCGTTAGGTTTTAGTCCTCTCGTTTAACAAAATAGTCAGCCAGCCAACTACGGCGGTCAGCATCCGTTCATTTCCATATTTAAATCAAGCGGGAGGCAATTAAAAAtatgaaaaacaacaaacaaaggcTAATTAACAGACGACTTGTTGGCTGTGCGAAGGAACATTAGTGGAACGCTCCCCAGCCGTCGCCTGCACTAATCTTACTGATACCTTCtttctggagaaagagagaaggagacagagagagaaaggggaaggagtgagagcaggagagagaaaggggaaggagtgaaaaagggagcgggagagagagaaaggagtgagaaagagagcgggagagagagtgagaaaggggaaggagtgagagagcaggagagagagagaaaggggaaggagtgaaaaagggagcgggagagagagagaaaggagtgagaaagagagcgggagagagtgagaaaggggaaggagtgagagagcaggagagagagaaaggggaaggagtgaaaaagggagcgggaaagagagagagagaaaggagtgagaaagagagcgggagagagagtgagaaaggggaaggagtgagaaagagagcgggagagagagaggaaggagtgagaaagagagcgtgagagagaggaaggagtgaaaaagagcgggagagagagaaaggggaaggagtgaaaaagagcgggagagagagagagagagaaaggggaaggagtgagaaagggagcgggagagagagagaaaggggaaggagtgagaaagagagcgggagagagagagaaaggagtgaaaaaaagcgggagagcgggagagagagagaaaggagtgagagagcgggagagagagagagaaaggagtgagaaagagagcgggagagagagagaaaggagtgagaaagagagcgggagagagaaaggggaaggagtgagaacgagagcgggagagagagagagaaaggagtgagagagcgggagagagagagagagagaaaggag

Function

NR:

description
PREDICTED: inaD-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472521 False 2392 lncRNA 0.50 5 55274691 55317707
TU472522 False 1142 lncRNA 0.48 3 55274691 55297316
TU472523 True 1411 lncRNA 0.49 2 55274691 55277041

Neighbor

gene id symbol gene type direction distance location
LOC110524076 LOC106613559 coding upstream 6331 55257674 ~ 55268360 (+)
LOC110524074 tal1 coding upstream 19578 55242498 ~ 55255113 (+)
LOC110524073 LOC106613986 coding upstream 35030 55237867 ~ 55239661 (+)
LOC118964621 LOC106613552 coding upstream 177434 55082899 ~ 55097257 (+)
LOC110524067 LOC106613550 coding upstream 233138 55032202 ~ 55041553 (+)
LOC110524077 tm2d1 coding downstream 170113 55487820 ~ 55504741 (+)
LOC110522974 LOC106613563 coding downstream 450269 55767976 ~ 55826824 (+)
LOC110524079 atpaf1 coding downstream 509500 55827207 ~ 55838164 (+)
LOC110524081 rab3b coding downstream 520853 55838512 ~ 55848072 (+)
LOC110524082 LOC106613566 coding downstream 531506 55849213 ~ 55864861 (+)
G416823 NA non-coding upstream 2881 55268452 ~ 55271810 (+)
G416821 NA non-coding upstream 55979 55217754 ~ 55218712 (+)
G416791 NA non-coding upstream 92065 55180492 ~ 55182626 (+)
G416893 NA non-coding downstream 39682 55357389 ~ 55361834 (+)
G416945 NA non-coding downstream 99424 55417131 ~ 55417724 (+)
G416941 patj non-coding downstream 110504 55428211 ~ 55452917 (+)
G416944 NA non-coding downstream 115724 55433431 ~ 55443491 (+)
G416942 NA non-coding downstream 135430 55453137 ~ 55453482 (+)
G415946 NA other upstream 661549 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 924076 54346481 ~ 54395448 (+)
G415809 NA other upstream 944211 54330080 ~ 54330480 (+)
G415808 NA other upstream 944911 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 1091261 54177929 ~ 54183430 (+)
G416857 NA other downstream 6938 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1300183 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 1408478 56726185 ~ 56729821 (+)
G418251 rtca other downstream 1606217 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 1626131 56943838 ~ 56958165 (+)

Expression


Co-expression Network