G417397


Basic Information

Item Value
gene id G417397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55276763 ~ 55279968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU473119
ctctctcccgctctctttctcactccttcccctttctctctccgctctctttctcactccttcgcctttctctctctcccgctctctttctcactccttcgcctttctctctctcccgctctctttctcactccttcccctttctctctctctctcccgctctctttctcactccttcgcctttctctctctctctctcccgctctttctcactccttcgcctttctctctctcccgctctctttctcactccttccgctctctctctcccgctctctttttcactccttcctctctctctctctctcccgctctctcactcctttctctctctctctctctcccgctcttctctctctctctcctgctctccttctcactccttcccctttctctctctctctctcccgctctctttctcactcctttctctctctctctcccgctctttctcactcctttctctctctctcttccgctctccCGCTTTTTTtcattcctttctctctctctctcccgctctcccgctTTTTTTCactccttctcctttctctctctttttcactccttcctctctctctctcccgctctctttttcactccttcctctctctctctcccgctctctttttcactccttcctctctctctctctctcccgctctctttctcactccttcccctttctctctctctcccactctctttctcactccttcccctttctctctctctcccgctctctttctcactcctttctctctcccgctctctctctctctctctcccgctctctttctcactccttcccctttctctctctctcccgctctctttttcaatcctttctctctctcccgctctctttttcactccttcctctctctctcccgctctctttttcactccttcctctctctctctctctctctctctctctctctctctctctcccgctctctctctctcccgctctctttctcactcctctctctctctctcccgctctctctcactcctttctctctctctcccgctctttctcactcctctctctctcttccgctctcccgctttttttcactccttcctctctctctctcgcgctctttctcactccttcccctttctctctctctctctcgctctctttctcactcctttctctctctctctctctcccgctctctcactcctttctctctctctctcccgctctcgttctcactccttcccctttctctctcccgctctctttctcactcctttctctctctctcccgctctctttctcactcctttctctctctctctcccgctctctcactcctttctctctctctcccgctctcccgctttttttcactcctttctctctctctcccgctctctttctcactccttcccctttctctctctctcccgctccctttctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473119 True 1436 lncRNA 0.53 2 55276763 55279968

Neighbor

gene id symbol gene type direction distance location
LOC118964623 NA coding downstream 26800 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 40191 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 95305 55123617 ~ 55181458 (-)
si:ch211-221n20.8 LOC106613553 coding downstream 154574 55102959 ~ 55122189 (-)
LOC110524069 LOC106613551 coding downstream 202812 55072085 ~ 55073951 (-)
LOC110524078 nfia coding upstream 270653 55546163 ~ 55726193 (-)
nphs2 LOC106613567 coding upstream 591232 55871200 ~ 55875392 (-)
LOC110524086 LOC106613573 coding upstream 825634 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 931770 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 960763 56240731 ~ 56383335 (-)
G417357 NA non-coding downstream 21665 55251540 ~ 55255098 (-)
G417386 NA non-coding downstream 39296 55237088 ~ 55237467 (-)
G416778 NA non-coding downstream 109293 55167165 ~ 55167470 (-)
G416777 NA non-coding downstream 110078 55166453 ~ 55166685 (-)
G417401 NA non-coding upstream 15735 55295703 ~ 55301442 (-)
G417405 NA non-coding upstream 30930 55310898 ~ 55317130 (-)
G417406 NA non-coding upstream 35273 55315241 ~ 55322745 (-)
G417362 NA non-coding upstream 120350 55400318 ~ 55405920 (-)
G417445 NA non-coding upstream 158161 55438129 ~ 55441958 (-)
G416110 NA other downstream 890535 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1271090 54002448 ~ 54005673 (-)
G415420 NA other downstream 1383857 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1657899 53617683 ~ 53618864 (-)
G417527 NA other upstream 328867 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1428830 56703896 ~ 56711499 (-)
G418830 NA other upstream 1554058 56834026 ~ 56834595 (-)
G419603 NA other upstream 2331091 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 2340086 57612040 ~ 57627128 (-)

Expression


Co-expression Network