XLOC_023420 (boc)


Basic Information

Item Value
gene id XLOC_023420
gene name boc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21206243 ~ 21258945 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046318
TCCTTTCAATGCAAGAAGTTGGGGAGCCGAAGAAAATGTCGGTGCTGCTGCAGCAGTAAATTACTGAAGCAGTAGCGGTTTAAGGGGAAAAAGAGGAGGAATTGGAGTTTTCTTGGATTAAATAGTGGGAAACGTTGGGAAAAGTCGAACTCCGAGAAACTGGTGGATTCAACTCCAAACTACTGCACGTTTTTggGGTAGTGTATGGAAGATGTCTGGGACATTGAATTGGATTCCCTGGGAAAGAAAGCGGAAGATTCGAGTGCTCTGTTCCCTGTGTGTGCTGCTGTTCTGCCTGCAGGATAGTAATGCTGTTACAGATGACGTTCCAGTGTTCACTGAGGAGCCGTTCTCGGTGGTACAGAAGCTGGGGGGCAGCGTGACCCTGCGCTGCAGTGCCCTGCCTAACCATGTCAACATCAGCTGGCATCTGAATGGCAAAGAGCTGCCAGCTGGGGGCGACGAGGAGCTGGGAGTGCTGGTGCGGCCCGGTTCTCTCTACATCCCCTCCCTTACAAACCTCACCGTGGGCAGATACCAGTGTGTGGCCACCACCAGCGTCGGGTCCTGCGCGAGTGTGCCGGCCAATGTTACTGCAGCGAaacTGCGGGATTTCGAGCCTGACGACCAGCAGGAGATTGAGGTGGATGAAGGGAACACAGCAGTAATCGAGTGCCATCTGCCTGAGAGTCAGCCTAAAGCTCAGGTCCGCTACAGTGTCAAGCAGGAGTGGCTGGAGACCTCTAAAGGGAATTACCTGATCATGCCTTCAGGAAATCTGCAAATAGCCAATGCTACACGGGACGACGAGGGCCCGTATATTTGTGCTGCTTACAACCCCGTCACGCAGGAAATAAAAACTTCCACCTCTACTGACCGTCTAAGAATACGACGGTCAACTTCTGAAGCGGCTCGTATCATCTATCCTCCGGCATCACGCTCCATTATGGTGAATAAAGGCCAGCGGCTTGTGCTGGAGTGTGTGGCCAGCGGGATTCCCACTCCACAGGTCACATGGGCTAAAGACGGCCTGGACTTGAGGAATCATAACAACACCAGATTCTTGCTCAGCAATTTGTTGATTGATGCTGCAAGCGAGAGCGACTCGGGCACTTACGTGTGTCTCGCTGATAATGGCATCGGCTCCACAAGCTCTGCTCAAGTGCTGTACGATGTGCAGGTGTTCGAGCCTCCTCAGGTGCGTGTGGAGCTGCAGCAGCAGGACGTGGCGTGGGGGGATACAGTGCGCTTCAGCTGTCAGGTGAGGGGCAAACCTGCGCCCACTGTGGTTTGGCTCCACAACGCTCAGCCGCTGAGCCCATCGCCCCGCCATCGGGTGTCTGCACAGGTGCTGCGTGTGCTCAATGTCGGCCCACAAGACGATGGCATGTACCAGTGCATGGCGGAGAACGGTGTGGGCAGCTCACAGGCAGCTACACGACTCCTCACTCTGCCTACAGTGCCCTCTCGAAAGATGCCCATGATTCGTCCCCTGAGTCCAGATAAGGTGTTGCGTGAGCAGCCGCCGCTGAAGCCACCAGTGTCCACCAGTGCGGTGCTGCCCTTCGACTGCTCTGAAGTACGAGTCTCTCCTGCTGAAGCTCCAGTCATTCTCAGTCAGCCGCGCACAGGCAAAGCAGATTACTATGAACTGACTTGGAAACCCCGTCATGATGGAGGAGCGCCTGTGCTGGAGTACATCATCAAGTACAGAAAGGCCGGAGAGTCTCCTGGAGAGTGGACCACCAACACTATTTCAGGGTCTCAGCACAAGCTCATACTAACCAAACTGCAGCCTGCCAGCCTCTATGAAGTGGAAATGGCTGCTAGGAACTGTGCTGGACTCGGGCAGCCTGCCATGATGACCTTCAGGACAGGCAAATGGCGAAGAGGGGGACCAATAGGACCTCCAAAAACACCAGTGGTGCAGCCTCGTCTCTCTCCTCCAGAAGCTCCAGACAGACCCACAGTGTCGATGGCCACCGAGACCTCCGCTTATGTGACGTGGATCCCTCGAGGGAATCGCGGTTTCCCCATCCAGTCGTTCCGCGTGGAGCACAAGAAGCTGAGGAAGGGCAGTGGAGACTGGGAGGTGGCGGTAAACAACATCCCTCCGTCCCGACTCTCGGTGGAGGTCACCGGCCTGGAGAAAGGAACATCATACAAGTTTAGAGTTTTGGCTGTTAATGTGTTGGGAGCGAGTCCACCCAGCGCCCCCTCCAAAGCCTACACAGTGGTGGGCAGCGGGCCTCCAAACAGACGTCCCATTGACGGACCCTACATCACCTACAACGAAGCCATCAATGAGACCACAATCATCCTCAAATGGACGTACACTCCACTCAATAACACCCCCATTTATGGATTCTACATCTTCTACCGACCCACCGATAGTGACAACGACAGCGACTACAAAAAAGATGTGGTGGAAGGTGACCGATATTGGCACTCCATCACAGACCTACAACCCGAAACAGCTTATGACATTAAGATGCAGTGTTTCAATGAAGGAGGAGAGAGCGAGTTCGGCAATGTCGTCATTTTAGAAACTAAAGCTCGCCCTCACCAGAGGACCACTCCCCCGGAGACTGCATCATCCAGACCCGAGCATCCAGGAAACCCTGTTCCCCGGCCTGGAGATCTGCCTTACCTCATAGTGGGTGTTGTGCTCGGAGCGTTCGTTTTCATCATCGTGGCATTCATCCCAATCTGCCTGTGGAGAGTCTGGGCTAAACAAAaACAAACATTAGACATGCGCTTTCCAACTCTGGCCGCTACGGTTTCTCCATGCCAGTATACCATGGTCCCGCTGCAGGGATTGGCTCTGGGTCGGGCCTGTCCTGTAGACCCTCATCTGAGCCCGTCCCACACCGTATACGCTCCTAAAGCAGAATACATTCCCAATGGAAAACATGCCGCTCAGCGCCTGCCACCTGGACACCAGGAGGATCCCAACTATGAGCTGGAGTGTGATGCTCTGCTGCCTCAGAACCTTCCCAATCAGCAACAAAACATTCACAATTACTGTAACGGGGTTCCTGGCTGTCCTGAAGAGGGGTTCTGTGTGTCTGATGATTCTCCTCTGCGGCTCTTCAGTCTGTCAGACGCTCCACTGCAGTCTCAGGACGACCACTCGCTCAACGAATGCATTCACACAGAAGAAGAGCTCACTGCCGATTTAACCCTGTTATCAATAGCCGAGGCCAGCATAAACCGGCTACTCCAACAAGCTGAGCCACAACAAGAGGGAACAACTGAGAACACAAAGCAGCTTGAGGAACAAGGGACACATGATCCAGAAGATGGATGAAACAAGAATACTACAACAAAAAGGAGGATTAAAAAAGagaaactatttatttttgtataacagaggctgtatttatatatttatgtatttgtacatatattttttttagaatgtgtgtgtatatacaggtTGTTTATATCAGATGATTTACGTATTTTGGTATGATTGTCTGTTACCATCTggactttttactttttaatataagCATGCTGTATAAATGATCCTCATGTGAGAAAAAGGAACAACCAGACACCTCAACAGCGTACATACAGTATCTGAAATAAGCTGTAGATTTTCCACTGGTAAGCGTTTGCTGATCTTTGAAGTACAGCTGGTGGGAAATGGAATGCTTGAAGGGCATTATGATAGTAATGATCCATTCAGTAGGAATGTACCAATGGGGACGACGTTGcatccaaaacaaaaaaaagacataatcTAGTATGTGTACGCCCTATATGCACAGTATGTTGTATCCAAGTACATTTAAGGGCTTTATGCTACTGTGAGGATTAAACACACAATGAATAAAACGGTTGAGAACTTTTTTTTGATTGTAACTTTGTTCCAGATGCTTTGTCGGTACAGTGTTTTACAGCTTTGTACATATGTTACTAAGATTTAtctattttcatcatcattaacataaatgttaacaaatataTGCAAAGTATATGCATTCTGTGTGTAGTAATATTCattatcagagagagagagagagagagagagaccataTATTGTaggtatttatatattttgctgtaGTCTGGATGTGAACTcttcaaaaaaaacaacaacagaaaaaaaaaacatgctgatcATGCTGATGTTGACAAATATTTGAAACTGGTTTGTAGTCCACTTTTAGTTGTACTTTTACTTTTGGAAACTTGCAGTTCTCTTTCATCAGTGTTAGCTTTTTCCCAGTTGTTATGACAACAAGAAACATGAAGGAAACGATCAGTCTCTGACATATTCCCCAAGTGTAGCTGCATGGTTACATGGATTGAGCACTATTGCCTGTAAATAAAGCTAAAGAAATCAGA
>TCONS_00046319
ATGCCTTCAGGAAATCTGCAAATAGCCAATGCTACACGGGACGACGAGGGCCCGTATATTTGTGCTGCTTACAACCCCGTCACGCAGGAAATAAAAACTTCCACCTCTACTGACCGTCTAAGAATACGACGGTCAACTTCTGAAGCGGCTCGTATCATCTATCCTCCGGCATCACGCTCCATTATGGTGAATAAAGGCCAGCGGCTTGTGCTGGAGTGTGTGGCCAGCGGGATTCCCACTCCACAGGTCACATGGGCTAAAGACGGCCTGGACTTGAGGAATCATAACAACACCAGATTCTTGCTCAGCAATTTGTTGATTGATGCTGCAAGCGAGAGCGACTCGGGCACTTACGTGTGTCTCGCTGATAATGGCATCGGCTCCACAAGCTCTGCTCAAGTGCTGTACGATGTGCAGGTGTTCGGTGAGTGCGATAAGAATGATGGGAAGAGTTTCTGATTATGGGGGTATTAAGAGCTTTATATGGAGGTCAAATATGAGACGACATTATTTAGTGTCTGcatcaaaaactgttttttttttttaactgtttaaactacctaattaaaatgagctgacacaacacaa
>TCONS_00047176
GCACTCTAAAGCTTCTCAGTTTCCTGAATGGAATACAAAGAACCTTTTTAACTTCGACATGCTCAAAACCAACTCTTGGATGTTCAAGATTTCCATagctttttctgtttttccattgAGAAAGTTTTTACAATCGttgttatgtgtttgtgtgcagaacTGCGGGATTTCGAGCCTGACGACCAGCAGGAGATTGAGGTGGATGAAGGGAACACAGCAGTAATCGAGTGCCATCTGCCTGAGAGTCAGCCTAAAGCTCAGGTCCGCTACAGTGTCAAGCAGGAGTGGCTGGAGACCTCTAAAGGGAATTACCTGATCATGCCTTCAGGAAATCTGCAAATAGCCAATGCTACACGGGACGACGAGGGCCCGTATATTTGTGCTGCTTACAACCCCGTCACGCAGGAAATAAAAACTTCCACCTCTACTGACCGTCTAAGAATACGACGGTCAACTTCTGAAGCGGCTCGTATCATCTATCCTCCGGCATCACGCTCCATTATGGTGAATAAAGGCCAGCGGCTTGTGCTGGAGTGTGTGGCCAGCGGGATTCCCACTCCACAGGTCACATGGGCTAAAGACGGCCTGGACTTGAGGAATCATAACAACACCAGATTCTTGCTCAGCAATTTGTTGATTGATGCTGCAAGCGAGAGCGACTCGGGCACTTACGTGTGTCTCGCTGATAATGGCATCGGCTCCACAAGCTCTGCTCAAGTGCTGTACGATGTGCAGGTGTTCGGTGAGTGCGATAAGAATGATGGGAAGAGTTTCTGATTATGGGGGTATTAAGAGCTTTATATGGAGGTCAAATATGAGACGACATTATTTAGTGTCTGcatcaaaaactgttttttttttttaactgtttaaactacctaattaaaatgagctgacacaacacaa
>TCONS_00046320
GCACTCTAAAGCTTCTCAGTTTCCTGAATGGAATACAAAGAACCTTTTTAACTTCGACATGCTCAAAACCAACTCTTGGATGTTCAAGATTTCCATagctttttctgtttttccattgAGAAAGTTTTTACAATCGttgttatgtgtttgtgtgcagaacTGCGGGATTTCGAGCCTGACGACCAGCAGGAGATTGAGGTGGATGAAGGGAACACAGCAGTAATCGAGTGCCATCTGCCTGAGAGTCAGCCTAAAGCTCAGGTCCGCTACAGTGTCAAGCAGGAGTGGCTGGAGACCTCTAAAGGGAATTACCTGATCATGCCTTCAGGAAATCTGCAAATAGCCAATGCTACACGGGACGACGAGGGCCCGTATATTTGTGCTGCTTACAACCCCGTCACGC

Function

symbol description
boc Enables identical protein binding activity. Acts upstream of or within regulation of smoothened signaling pathway and retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior neural keel; nervous system; neural plate; neural rod; and neural tube. Orthologous to human BOC (BOC cell adhesion associated, oncogene regulated).

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04360 Axon guidance

ZFIN:

id description
ZDB-GENE-030131-6560 Enables identical protein binding activity. Acts upstream of or within regulation of smoothened signaling pathway and retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior neural keel; nervous system; neural plate; neural rod; and neural tube. Orthologous to human BOC (BOC cell adhesion associated, oncogene regulated).

Ensembl:

ensembl_id ENSDARG00000074335

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046318 False 4356 mRNA 0.49 19 21206243 21258945
TCONS_00046319 False 588 lncRNA 0.46 2 21226533 21228953
TCONS_00047176 False 906 lncRNA 0.46 3 21226533 21231171
TCONS_00046320 True 403 lncRNA 0.46 2 21228869 21231171

Neighbor

gene id symbol gene type direction distance location
XLOC_023419 atp6v1ab coding downstream 34121 21154120 ~ 21172122 (-)
XLOC_023418 gramd1c coding downstream 56074 21131874 ~ 21150169 (-)
XLOC_023417 zdhhc23b coding downstream 74636 21122836 ~ 21131607 (-)
XLOC_023416 qtrt2 coding downstream 115659 21058779 ~ 21090584 (-)
XLOC_023415 kpna1 coding downstream 249462 20941360 ~ 20956781 (-)
XLOC_023421 spice1 coding upstream 71808 21330753 ~ 21369754 (-)
XLOC_023422 atp8a2 coding upstream 112334 21371279 ~ 21512425 (-)
XLOC_023423 gpr12 coding upstream 325129 21584074 ~ 21588914 (-)
XLOC_023424 usp12a coding upstream 341375 21600320 ~ 21620316 (-)
XLOC_023425 AL929009.3 coding upstream 344643 21603588 ~ 21637183 (-)
XLOC_023665 dre-mir-735 misc upstream 16919016 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 674430 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1018813 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1021218 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1143193 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1151986 20032331 ~ 20054257 (-)
XLOC_023437 AL627129.1 non-coding upstream 704107 21963052 ~ 21963168 (-)
XLOC_023442 NA non-coding upstream 794864 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 1049999 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 1113041 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 1619996 22878941 ~ 23218030 (-)

Expression


Co-expression Network