G417406


Basic Information

Item Value
gene id G417406
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55315241 ~ 55322745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU473131
GCTTGCTATGAAAAGAAGGCGTGTATgtatcgaggcattcagttactgtttatTTGAGCGTTACAGGCTACTACACCGCTCAcgtcacaaaatacattttgaaatctatattattcaattattgcacccacactgctcgcgcacgCCAACGAGTGTCTGTGTTGCCacgggctaaaatagaagtcagttctatttgtgacgcagatcgcgccataagtcctgcctctcccgtctcctcattggtttatagaagcaggtacccacgtgccatctcctcattggttatacccacgtgggtgactgacaGACGAacaaggtcagtggcggtaatgcacctaatttatgaaagtctccaatcgcaatataaagtcaagagaagaaaaagcctagaAGGAGGAAAGctgactagaaacgatttggttgatgtgtggattaattggcggagtagaggaccttgtgtatttcaggtaagataacaactcaatgtttatatcccaggacaaattagatagcaacagcaagctagctaaataggacaaattagctagcaagtgcaagctagctaaatctgacaaattagctagcaagtgcaagctagctaaatctgacaaattagctagcaagtgcaagctagctaaataggacaaattagctagcaagtgcaagctagctaaataggacagattagctagcaagtgcaagctagctagctaaattgcaaTAAATGTTTAATACTTTTCAACCGGTCCCCAAATTAATGttattggttcagagtttgttttgatatttttacCTGTGTGTCGTGATTGCGTTTCGTGAGAGGTGGGGCAAAATCAATTTGTGCACAATGGCACACGGGTGCAGCCGGGGTGGGTATGATGGAAGCGTTTCCAGTATcaccggttccagtatctcagaaacggccggaCTTATGAGCTTTTCACGCACAACCGTGTCTAGGGTTTAGCCCGAGGATGGCGCAACAAACAGAACAAATCCCgtcagtggcagtcctgtggACGAAAACACCTTGTTGATGAGAGAGAATGGGAAGAATAGTGCAAGCTAACGAACAGACAAATAACTGTGCTGCACAATAGTGATGTGCAGAATGACATCTCGGAACTCACAACTCGttggtccttgtcacggatgggctatttagggctcccgagtggcacagcagtctaaggcactgcggtCTAAgtcattgcatctcagtgcaagaggcatcactgcagtccctggttcgaatccaggctgcatcacatccagccgtgattgggagtcccatagggcagcgcacaatgcccagtgtcatccaggtttggccggggtaggctgtcattgtaaataagaatttgttcttaactgacctagataaataaaggttaaattaaaaaattgCAGCAGAccaccacaccgggttccactcctatcagtgTGACTCTAGTGGGCCCGGTATCACTGGACaactgaggagtggaaaaacattgcctggtctgatgaattCCTGTtccgtcatgctgatggcagagtcaggatttggcgtaagcagcatgagtccgtGGAcctatcctgcctggtgtcaacggtacaggctgatggtgtaatggtgtggggactGTTTTCCTGGcgcacgttaggtcccttgataccaattgagcaacgaaTGTTTCCCGACACTTTTAGAatccatgccctgaagaattcagaCGGCGTAAAGGCATCCGAACCAGGTACTAAGATggctgtacctaataaactgtctggTGACtgtagacatacataaacacagtcttgtacagctaaccttgtggggggacacaattcagtcccattcaaaatcctattttccctaaaccctaacccatactcttgccctagctcctaaccctagctcctaatcctagacctaattctaaacctaacattaattctaaccttaactctaaaccccctagaaatagcatttgacctcgtggggactaacaaaatgtctcCAGTTGGTCAAATCTTTcacacacaaacacactaacaccCCACCCCACTACTCATATTTATATGGCCAAATAAGGTATCAGACTTCAAACGTAATGACACCGATCACCCAATGTGTCCGCATTGTTTTTTAATTGCAGATTATTTTACATCCATCAAAGATATTCCCTAATAAGGGACAATGATGCCATTTTATTTCcagatatgtaaaaaaaaaatacattttccaaacATAAATTCTTTCATTTTATTTGACCATGATGTGTATGTATTTATCAATGggggtgtgagtgtgtatgcACATACATTCTCTATGTACCGTATGTGTGTGCAGTAGAAAAtactgccgtgtgtgtgtgcacacccgCCCATGCACTGTGTGGTTATCAGCTCCGTGCAGCCGGCTGGCAGtttggagcactgggccagataATCCCAGGCCTTTATGCTAATGCAGCTTTATCAGTCCAGCTCCAGGAGCCTCAGCACTGGGCTAGCCCTGCTGCATAGcgctgattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacccaggaCACCCAGCAATTACTGTTGACTACTAACCCCCTCCCTCCACACATCTCTTTCTCACTCAGTGTCTGActcgatctctccctctctctctctttctagtttGTGCTGTTTCCATCTCTCGcggtccctctcactctctcactccttcccctttctctctctctcccgctctttctcactccttcccctttctctctctctcccgctctctcactctttcccctttctctctccctcccgctctttctcaatccttcccctttctcgctctttctcactccttcccctttctctctctccctcccgctctctttctcactccttcccctttctctctcgctctctcccgctctctttctcactccttcccctttctctctccctctctcccgctctctttctcactccttcccctttctctctccgctctctttctcactccttcacctttctctctctctcccgctctctttctcactccttcgcctttctctctccgctctctttctcactccttcgcctttctctctctcccgctctctttctcactccttcgcctttctctctctcccgctctttctcactccttcgcctttctctctctcccgctctctttctcactccttcgcctttctctctctcccgctctttctcactccttcgcctttctctctctcccgctctctttctcactccttccgctctctctctcccgctctctttttcactccttcctctctctctctctccccctctctcactcctttctctctctctctctctctcccgctctctttttcactccttcccctttctctctcgctctctcactccttcccctttctctctccctcccgctcgttttcactccttcccctttctctctcgctctctcactccttcccctttctctctccctcccgctctttctcactTCTTCCcctttctcgctctttctcactccttcccctttctctctctccctctcgctctctttctcactccttcccctttctcgctctctctccctcccgctctctttctcactatcttcccctttctctctctctcccgctctctttctcactcctttctgtctctctctcccgctctctctctctcgctctcccgctctttttcactcattccccttttctccctctctctcccgctctctttctcactccttcccctttctctctctatcccgctctctctcactccttcccctttctctctctctctcctgctctctttctcactccttcccctttctctccctctctctcccgctctctttttcactccttcctctctctctcccgctctctttttcactccttcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcccgctctctttctcactccttcccctttctctctctctctctccgctctctttctcactccttcgcctttctctctctctcccgctctctttctcactccttcgcctttctctc

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473131 True 4143 lncRNA 0.48 4 55315241 55322745

Neighbor

gene id symbol gene type direction distance location
LOC118964623 NA coding downstream 65278 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 78669 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 133783 55123617 ~ 55181458 (-)
si:ch211-221n20.8 LOC106613553 coding downstream 193052 55102959 ~ 55122189 (-)
LOC110524069 LOC106613551 coding downstream 241290 55072085 ~ 55073951 (-)
LOC110524078 nfia coding upstream 227876 55546163 ~ 55726193 (-)
nphs2 LOC106613567 coding upstream 548455 55871200 ~ 55875392 (-)
LOC110524086 LOC106613573 coding upstream 782857 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 888993 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 917986 56240731 ~ 56383335 (-)
G417401 NA non-coding downstream 13799 55295703 ~ 55301442 (-)
G417397 NA non-coding downstream 35273 55276763 ~ 55279968 (-)
G417357 NA non-coding downstream 60143 55251540 ~ 55255098 (-)
G417386 NA non-coding downstream 77774 55237088 ~ 55237467 (-)
G417362 NA non-coding upstream 77573 55400318 ~ 55405920 (-)
G417445 NA non-coding upstream 115384 55438129 ~ 55441958 (-)
LOC110522973 patj non-coding upstream 165209 55268446 ~ 55489840 (-)
G417465 NA non-coding upstream 175337 55498082 ~ 55499624 (-)
G417487 NA non-coding upstream 202923 55525668 ~ 55525908 (-)
G416110 NA other downstream 929013 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1309568 54002448 ~ 54005673 (-)
G415420 NA other downstream 1422335 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1696377 53617683 ~ 53618864 (-)
G417527 NA other upstream 286090 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1386053 56703896 ~ 56711499 (-)
G418830 NA other upstream 1511281 56834026 ~ 56834595 (-)
G419603 NA other upstream 2288314 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 2297309 57612040 ~ 57627128 (-)

Expression


Co-expression Network