G417445


Basic Information

Item Value
gene id G417445
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55438129 ~ 55441958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU473171
gacagagtagagataatcagccaattcatattctctgtttagggtcagatagcaatttagtcggctttgggattttgtttcgtttttccagtattgtaaatatgattcctttgattggttcatgattgtgcttattggaattctttcttttgaagcagtgctggcgtcagcttggttggtgaggtccaacaccagctgactgagagggctcgtttctgggctcagctcttgggcttgaagtgctttaaattgcagactcgaatttggacttgaatttagatgtagccaaaattttaatgatcttttctgtattttcattattactggaaaacggcccaattctgccctacatgcattagttggtgtatttctctggacttgtagaattttccgacagaattctgcatgtagggcttcaattggatgtttgtcccacattttaaaatccagtttattgagtggcccccaaacctcacttccataaagtgctattggtaggattacactgtcaaatattttagtccaaattctaattgggatgttgattttgaataatttcatttttattgcatacattgctctgcgggctttttctttgagtgccttcactgccatattaaagtttcccgatgcagatatggtcagaccaaggtaggtgtaatttttagtgtgttcaattaaggtgttgttcagggtgaatttacatttgtgtttctgacatctgggttttttttggaaaatcatgattttagttttttggaaatttactgccagggcccaattatggcaatattgctccagaatattcatgttttgttgaagaccttctttggttggtgatagaagtaccaagtcatcagcatatagcaggtatttcacctctgtgtcaaatagtgtgagtcctggggctggagattggtccaacatgtctgctaattcattgatataaatgttgaaaagatttggactcaaattgcagccttgtctcacacctcgacattgtgaaaaaaattctgttctttggtttttgatttttattgcacacttgttttctgtgtacgtacattttattaagtcatacaccttaccaccaagcccactttgtagaattttgtagaatagcccttcg
>TU473172
gacagagtagagataatcagccaattcatattctctgtttagggtcagatagcaatttagtcggctttgggattttgtttcgtttttccagtattgtaaatatgattcctttgattggttcatgattgtgcttattggaattctttcttttgaagcagtgctggcgtcagcttggttggtgaggtccaacaccagctgactgagagggctcgtttctgggctcagctcttgggcttgaagtgctttaaattgcagactcgaatttggacttgaatttagatgtagccaaaattttaatgatcttttctgtattttcattattactggaaaacggcccaattctgccctacatgcattagttggtgtatttctctggacttgtagaattttccgacagaattctgcatgtagggcttcaattggatgtttgtcccacattttaaaatccagtttattgagtggcccccaaacctcacttccataaagtgctattggtaggattacactgtcaaatattttagtccaaattctaattgggatgttgattttgaataatttcatttttattgcatacattgctctgcgggctttttctttgagtgccttcactgccatattaaagtttcccgatgcagatatggtcagaccaaggtaggtgtaatttttagtgtgttcaattaaggtgttgttcagggtgaatttacatttgtgtttctgacatctgggttttttttggaaaatcatgattttagttttttggaaatttactgccagggcccaattatggcaatattgctccagaatattcatgttttgttgaagaccttctttggttggtgatagaagtaccaagtcatcagcatatagcaggtatttcacctctgtgtcaaatagtgtgagtcctggggctggagattggtccaacatgtctgctaattcattgatataaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473171 False 1129 lncRNA 0.38 2 55438129 55441958
TU473172 True 952 lncRNA 0.38 2 55438306 55441958

Neighbor

gene id symbol gene type direction distance location
LOC118964623 NA coding downstream 188166 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 201557 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 256671 55123617 ~ 55181458 (-)
si:ch211-221n20.8 LOC106613553 coding downstream 315940 55102959 ~ 55122189 (-)
LOC110524069 LOC106613551 coding downstream 364178 55072085 ~ 55073951 (-)
LOC110524078 nfia coding upstream 108663 55546163 ~ 55726193 (-)
nphs2 LOC106613567 coding upstream 429242 55871200 ~ 55875392 (-)
LOC110524086 LOC106613573 coding upstream 663644 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 769780 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 798773 56240731 ~ 56383335 (-)
G417362 NA non-coding downstream 32209 55400318 ~ 55405920 (-)
G417406 NA non-coding downstream 115384 55315241 ~ 55322745 (-)
G417405 NA non-coding downstream 120999 55310898 ~ 55317130 (-)
G417401 NA non-coding downstream 136687 55295703 ~ 55301442 (-)
G417397 NA non-coding downstream 158161 55276763 ~ 55279968 (-)
LOC110522973 patj non-coding upstream 45996 55268446 ~ 55489840 (-)
G417465 NA non-coding upstream 56124 55498082 ~ 55499624 (-)
G417487 NA non-coding upstream 83710 55525668 ~ 55525908 (-)
G417505 NA non-coding upstream 118829 55560787 ~ 55561035 (-)
G416110 NA other downstream 1051901 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1432456 54002448 ~ 54005673 (-)
G415420 NA other downstream 1545223 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1819265 53617683 ~ 53618864 (-)
G417527 NA other upstream 166877 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1266840 56703896 ~ 56711499 (-)
G418830 NA other upstream 1392068 56834026 ~ 56834595 (-)
G419603 NA other upstream 2169101 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 2178096 57612040 ~ 57627128 (-)

Expression


Co-expression Network