G417583


Basic Information

Item Value
gene id G417583
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55733816 ~ 55735222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU473337
attccatatgtgttcatagttttgatgtcttcgctgttatttacaatgtagaaaatagtacaaaaataaaaaccttgaatgagtaggtgttctaaaacgtttgaccggtagtgtatgtcaacaatccttcctccaaatGACCCTTCTATGGATATTTTTCATGAAAATCTCCCAAAATGTTTTTGTTCTTGTTTCGTGAGGAATCACCCCTTTTCAACCAAAAGATGACGACAAATCCGTTTTTTGACATTTACAAACTTGTCAAAAATGGATAATGTAGCTAGTTAGACCATAATTGTCAATGTTAAGCATGCTAGCTAACTTTAAAATGAGCAACAtttactagctagctaaaatcgtaAAGGTTAAAGAATTGTTCTGACTTCAAATCACTTTAACACAATCATATCAGACTTAGGACCTCCTTAATGGTAGTctccacatccaacgagcatgtGAACGCTGTCAGAAGCCTATAGAATGTTCCACAATGCTGTATCTTTGGGTGTGATTCTATTAAAATCCCAAAGATTAGAAAGGAGGTCAGTTCGCTGCTAGTGTCACGATACTTGATACCAAAAAGGTACCGCAGCAAAACAAATGCATATTAGCTAAAGTCACAGAATGGCACTTAATCCAGACAGATCTTTAGAGTTCAATATCATTACATTAGAAATGTTTGATTTTTTAATGTATGCATTAATGAATCAATTATACAATCATACATTCAATTGGTTTATTTGCCAATCTAACTACATAGCAACgggaattatttatttgaatggtaTGTCTCTATTGATATactgggtaaatcaagatgtCGCCTACGCCcattcacaatacaggtgaacACATATTCAgtaggagtgtgtgcatgcattgagttattAATCAGCTCGTTTTGGCTGATTTCAGGAGGCTACAGATGAAAAACAATCTGTTCACCCTCCATTTGGGACTTATTTTATCGAACTGAATACTAATCAGCGACATTTGCATGGAAGAAGGAATCTTTTCTCTTCTTAAACTGTGCGCCGTCTCGTCATTCACGCACAAAGTACTTTCCAGTCTCAAGCAAAGATTATCTTAACTGGGAGAAACATCAGGTAGGGGATACTAAGTGAATTAATACAGTTTTTGGTGACAATCAGCATTGTAATCAGCAATATTTTGCATTATGGTTGGCATATTACCACAAACAAGGTAGTGAAACGCTGTTGGCTTCGTGTGTGTGTCTTAACACAGCGGGTGTCTGAGTAAAATCACAACCACAACAAAAATATTGTGGGAAAAGAAAATGACACGAAGATACTCCAGTCTGAGCTTAAACTGCTTAAACCAGGTAGAACGTGTGTTGAAATGATAATGAACTACCTTTAAAAAGTATTTAATCCTTGTAAATGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473337 True 1407 lncRNA 0.36 1 55733816 55735222

Neighbor

gene id symbol gene type direction distance location
LOC110524078 nfia coding downstream 7623 55546163 ~ 55726193 (-)
LOC110522973 patj coding downstream 245849 55268446 ~ 55489840 (-)
LOC118964623 NA coding downstream 483853 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 497244 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 552358 55123617 ~ 55181458 (-)
nphs2 LOC106613567 coding upstream 135978 55871200 ~ 55875392 (-)
LOC110524086 LOC106613573 coding upstream 370380 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 476516 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 505509 56240731 ~ 56383335 (-)
LOC110524089 LOC106613577 coding upstream 720893 56456115 ~ 56459513 (-)
G417528 NA non-coding downstream 121934 55611342 ~ 55611882 (-)
G417522 NA non-coding downstream 134943 55597951 ~ 55598873 (-)
G417505 NA non-coding downstream 172781 55560787 ~ 55561035 (-)
G417487 NA non-coding downstream 207908 55525668 ~ 55525908 (-)
G417584 NA non-coding upstream 52 55735274 ~ 55738366 (-)
G417589 NA non-coding upstream 13477 55748699 ~ 55748913 (-)
G417598 NA non-coding upstream 33420 55768642 ~ 55769071 (-)
G417600 LOC106613563 non-coding upstream 35687 55770909 ~ 55771508 (-)
G417601 LOC106613563 non-coding upstream 36877 55772099 ~ 55772349 (-)
G417527 NA other downstream 124086 55608835 ~ 55609730 (-)
G416110 NA other downstream 1347588 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1728143 54002448 ~ 54005673 (-)
G415420 NA other downstream 1840910 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 973576 56703896 ~ 56711499 (-)
G418830 NA other upstream 1098804 56834026 ~ 56834595 (-)
G419603 NA other upstream 1875837 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1884832 57612040 ~ 57627128 (-)
G419714 NA other upstream 1964523 57699745 ~ 57705936 (-)

Expression


Co-expression Network