G417602


Basic Information

Item Value
gene id G417602
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55772741 ~ 55773069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU473356
ATGTCAATCAATGGAAGTTTACCCGAGGCTTGTTAAATATACAGAGCAACTACGGAGAAGAATCAAAGAGAGTGGCTTTGCAAAACTACATTCAACACAAGGGACAAAAAAAGTAAGTGACAGTGTTTGATTCCTTTGCTGTACGTGTTCAGTAGTATCAATTATCTGACAGGACAAAAGCTCCCAGATGTGATGCCATAcgaatgtaggatcttaatttgagccagtttgctacagcaggaaaataatcctgcagcaacaggaaatgtgagttattatgtggattataattcatggatattcatgtaggggttgatgcatttttcTTG

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473356 True 329 lncRNA 0.38 1 55772741 55773069

Neighbor

gene id symbol gene type direction distance location
LOC110524078 nfia coding downstream 46548 55546163 ~ 55726193 (-)
LOC110522973 patj coding downstream 284774 55268446 ~ 55489840 (-)
LOC118964623 NA coding downstream 522778 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 536169 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 591283 55123617 ~ 55181458 (-)
nphs2 LOC106613567 coding upstream 98131 55871200 ~ 55875392 (-)
LOC110524086 LOC106613573 coding upstream 332533 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 438669 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 467662 56240731 ~ 56383335 (-)
LOC110524089 LOC106613577 coding upstream 683046 56456115 ~ 56459513 (-)
G417601 LOC106613563 non-coding downstream 392 55772099 ~ 55772349 (-)
G417600 LOC106613563 non-coding downstream 1233 55770909 ~ 55771508 (-)
G417598 NA non-coding downstream 3670 55768642 ~ 55769071 (-)
G417589 NA non-coding downstream 23828 55748699 ~ 55748913 (-)
G417584 NA non-coding downstream 34375 55735274 ~ 55738366 (-)
G417604 LOC106613563 non-coding upstream 1272 55774341 ~ 55774674 (-)
G417611 LOC106613563 non-coding upstream 6644 55779713 ~ 55780052 (-)
G417612 LOC106613563 non-coding upstream 8719 55781788 ~ 55782230 (-)
G417615 LOC106613563 non-coding upstream 13892 55786961 ~ 55787214 (-)
G417609 rab3b non-coding upstream 20515 55793584 ~ 55848057 (-)
G417527 NA other downstream 163011 55608835 ~ 55609730 (-)
G416110 NA other downstream 1386513 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1767068 54002448 ~ 54005673 (-)
G415420 NA other downstream 1879835 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 935729 56703896 ~ 56711499 (-)
G418830 NA other upstream 1060957 56834026 ~ 56834595 (-)
G419603 NA other upstream 1837990 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1846985 57612040 ~ 57627128 (-)
G419714 NA other upstream 1926676 57699745 ~ 57705936 (-)

Expression


Co-expression Network