G418671


Basic Information

Item Value
gene id G418671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56589030 ~ 56593265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474529
TTTTATTGGAATGAGCTGAAACAGAGTGAATCTTTGCAGCATCCTTTTATTTTCAGGACTCTTCAGCTACATATGCTCAGCCATGATGACATGGAGGTCAAGGGGAACAGTTCAAGGGTAAAAAGTATTTTCACACACTCCAGGAGCATGAACACACAGTttcacacaaacaaaaacacaccatAACTTACAATGCCATGGACTGTACCCATTCTCCACAAACATCTCGTCCACCTGTCACCCATCACTGTCACCAGGGACTTGGTTGCGCAATAAGTACAGTATTTAATGCTCAAGGTACTTTGTATCGTAATACAGCATTGCAAAAGGATTCacaaagtttacacacactttgTTTTTGTGACAAACACAAGTGATTTTGAGATGGTACATAATTGTCTAGGTCACCATCATGCTTCAAATTGTCCATAATCTGAAATAAATGCAAATATTGTAAACTCCAAGTCAAACTCTTCCTACCAGACATAACACTTCCGATAAGTGAAAAAATGAAAACATTTAAGTAAACTGAGAAACAAATTGTTAAAATGTTTTCTACCTCTAAAGACACACTGATGAAATACTGTATTTCTCGTACAGTGAACGTGTAGTGTTAACTCATAAAAGACAAAGACATAAAAGACAAAGACATACAATATATTTTGCTAACTTTATAAGACCTTTGAAAGGAGTGTTTTCAGAACTTTTGAGACTCACAggttgcgtttacacaggcagtccaGTTAAGATTTTTTGCTCTACCAATTGGTCTTTGACCACTCACATTAGATCCTTTTCCAAAAATCATCTGATCAGTCAAGACCGATTCGTGAAAAACGATCAGAATTAGAATGCCATAGAGAAAACCTTGATCACTAGTGTCCATTATATTTCATACAGTAGTACAATCACAATACCCTTATTCCTCTTATGTATGGTTTTACTGTCTTGATTTCCCAGAAAGACTTCAGGGTCTGTGGATTGATATGACATTCAACCTAAAATAGTTAATTAATGTGTTATGTTCACATTAAGTCCTCAAACGAGTGGAGACCTATTGAATCAAAGTCTGTAACCAGGTTTCTACGATAATTAACATAACACCAGTCTGTTTGGTCATTTTTCCACTCCTGTCATGCTAAACATACATCTTTGGCatatgacacagagtacaaggagtggaacgttagctaaacagactggtaacCAGGCTAACACAACAGTATCATTCTCCTTGAACTGTATAGGAACACACtgaaaacagaagaaaaaaaaacatgcctGCATATTCAGTCAACCATTGACTTACGACTCATCCTGGGACTCTGGTTACCGTTTTGAAATGTAATTTCAAGGTAGGGGGCAGGAACTGGGAAGCGAGACCAAAATGAACCATTCTAGACCCAGCAtaacatacatacagtatcagCCTAAGGCACTGGCTATGCAGAGCACAGCAACTACCAGGGCCATATTCATTACGCAACAAACAGAAAACTGACTTAAACAGGGACTACCTTGAACATCTCCAATAAGAAACACAATTtttttgcaaaatgttttgctacggtgtgccctaatgaatacagcCCAGGTGTGACTCAGTCAGTCCCTTCCCCTTATTCCAACATCATGTTCATGTAACACTGATAAACCTTAACACTAATTCCTGGCAGGGGGAAAGCAGGTCAGGCTTCTCAATTAGCATTTCAGTTGAACACTTAACACTTTGGTATAAGGGTCTTGTAAAAACTGCATAACACATTCAAAAACAAATGCATGACGCTTAGTAGCTTAGATAATCAACTTAAGGTCTGTTGACACTAGCTTGCCAATTGAATTGTACCAAGTATTTATGAAGTGCCTGGGGGCGTATCATATACTGATTATAAGCATGTTATATAGTCTTTAGAAGGGCTGAAACACTGGCTAAAAGACACCAGACATATGAAGACTTTTCGCACAAAATTAGAGTGCTCGCATTGAGACATTAAAATCAAGCTTGAGCCCGGTTCGAGATACAAAAGTATATGGTTTTGCTCCATTCCATTCAGTATTGCAGGAAGTGACTTGATTTCACAGGCGGGTGTTAAACACCTGTTGATAGTGTATAAGCAAATACCAAAAATACATTAAGTACAAAATGAGAGAACATAAATGAATTAAAAACAATAACATTAAGTTCATCCATTTTAGTGTGGTTAGTGATACGTCTACCCGCTTAGCAATATATAATTTTCCTTGTTACGTCAGTGTTTTGTTTTAACTATGACCAACTACGTTTATATATATAAAGTTGAATATACTTGTATAAACCTGTTACACAGTCAGTGcacgacaaaacaaaatatattttaaaaaactaTGACCATGGTAGCCGTAGGGGTTTTCAGTGAGAAACGACAGACAAGGCCCTCTAAATACACTAATGATTAGTCTTCTTCATACATAATATTCGGAATATTAACACTAAAATGCCACAAGGAGTTTGAACTACCCTGGTTTACCTCAAACAGTTTTCTGTAAAACATTTTCAGGATtagtattcacatcctacctaaAATTGTGCATGCACAGAAACTAAATCTTTCACGCCAAGGGAGGTTTAAGTTGAATGCAGGTATCTGAAACGACGATTGAGAACGTTGCTTGAGAGGAAACTGCAGCAGCCACAGAAGCATCACTGTATATACAGCGTATGAAGTAAAAAGGGGGTCGGAGTTAGATAGCCATCTCCCTATGTCAATGGAAACCTTGGATGGTTTCCCCAACACCATGTAAAGTCCATCCCTATGGTCAAACGGAGACAGGGGTGAGGGGGTCAGTGTGTCGTGGTGGACGGTCTGGTCATCACAGGATGAAGAAGAGAATGACGACCACAAACAGAATGGCCAGTAGAATACCAATAGCACACCACTGTCGCCGGTctgGTCATGTTGGAGACCTTGGCCAGCTTCTTCATGACGTTGTCCAGTCTGGAGTGGGTACTTTCCATCTCATGGGAGAAG
>TU474527
TTTTATTGGAATGAGCTGAAACAGAGTGAATCTTTGCAGCATCCTTTTATTTTCAGGACTCTTCAGCTACATATGCTCAGCCATGATGACATGGAGGTCAAGGGGAACAGTTCAAGGGTAAAAAGTATTTTCACACACTCCAGGAGCATGAACACACAGTttcacacaaacaaaaacacaccatAACTTACAATGCCATGGACTGTACCCATTCTCCACAAACATCTCGTCCACCTGTCACCCATCACTGTCACCAGGGACTTGGTTGCGCAATAAGTACAGTATTTAATGCTCAAGGTACTTTGTATCGTAATACAGCATTGCAAAAGGATTCacaaagtttacacacactttgTTTTTGTGACAAACACAAGTGATTTTGAGATGGTACATAATTGTCTAGGTCACCATCATGCTTCAAATTGTCCATAATCTGAAATAAATGCAAATATTGTAAACTCCAAGTCAAACTCTTCCTACCAGACATAACACTTCCGATAAGTGAAAAAATGAAAACATTTAAGTAAACTGAGAAACAAATTGTTAAAATGTTTTCTACCTCTAAAGACACACTGATGAAATACTGTATTTCTCGTACAGTGAACGTGTAGTGTTAACTCATAAAAGACAAAGACATAAAAGACAAAGACATACAATATATTTTGCTAACTTTATAAGACCTTTGAAAGGAGTGTTTTCAGAACTTTTGAGACTCACAggttgcgtttacacaggcagtccaGTTAAGATTTTTTGCTCTACCAATTGGTCTTTGACCACTCACATTAGATCCTTTTCCAAAAATCATCTGATCAGTCAAGACCGATTCGTGAAAAACGATCAGAATTAGAATGCCATAGAGAAAACCTTGATCACTAGTGTCCATTATATTTCATACAGTAGTACAATCACAATACCCTTATTCCTCTTATGTATGGTTTTACTGTCTTGATTTCCCAGAAAGACTTCAGGGTCTGTGGATTGATATGACATTCAACCTAAAATAGTTAATTAATGTGTTATGTTCACATTAAGTCCTCAAACGAGTGGAGACCTATTGAATCAAAGTCTGTAACCAGGTTTCTACGATAATTAACATAACACCAGTCTGTTTGGTCATTTTTCCACTCCTGTCATGCTAAACATACATCTTTGGCatatgacacagagtacaaggagtggaacgttagctaaacagactggtaacCAGGCTAACACAACAGTATCATTCTCCTTGAACTGTATAGGAACACACtgaaaacagaagaaaaaaaaacatgcctGCATATTCAGTCAACCATTGACTTACGACTCATCCTGGGACTCTGGTTACCGTTTTGAAATGTAATTTCAAGGTAGGGGGCAGGAACTGGGAAGCGAGACCAAAATGAACCATTCTAGACCCAGCAtaacatacatacagtatcagCCTAAGGCACTGGCTATGCAGAGCACAGCAACTACCAGGGCCATATTCATTACGCAACAAACAGAAAACTGACTTAAACAGGGACTACCTTGAACATCTCCAATAAGAAACACAATTtttttgcaaaatgttttgctacggtgtgccctaatgaatacagcCCAGGTGTGACTCAGTCAGTCCCTTCCCCTTATTCCAACATCATGTTCATGTAACACTGATAAACCTTAACACTAATTCCTGGCAGGGGGAAAGCAGGTCAGGCTTCTCAATTAGCATTTCAGTTGAACACTTAACACTTTGGTATAAGGGTCTTGTAAAAACTGCATAACACATTCAAAAACAAATGCATGACGCTTAGTAGCTTAGATAATCAACTTAAGGTCTGTTGACACTAGCTTGCCAATTGAATTGTACCAAGTATTTATGAAGTGCCTGGGGGCGTATCATATACTGATTATAAGCATGTTATATAGTCTTTAGAAGGGCTGAAACACTGGCTAAAAGACACCAGACATATGAAGACTTTTCGCACAAAATTAGAGTGCTCGCATTGAGACATTAAAATCAAGCTTGAGCCCGGTTCGAGATACAAAAGTATATGGTTTTGCTCCATTCCATTCAGTATTGCAGGAAGTGACTTGATTTCACAGGCGGGTGTTAAACACCTGTTGATAGTGTATAAGCAAATACCAAAAATACATTAAGTACAAAATGAGAGAACATAAATGAATTAAAAACAATAACATTAAGTTCATCCATTTTAGTGTGGTTAGTGATACGTCTACCCGCTTAGCAATATATAATTTTCCTTGTTACGTCAGTGTTTTGTTTTAACTATGACCAACTACGTTTATATATATAAAGTTGAATATACTTGTATAAACCTGTTACACAGTCAGTGcacgacaaaacaaaatatattttaaaaaactaTGACCATGGTAGCCGTAGGGGTTTTCAGTGAGAAACGACAGACAAGGCCCTCTAAATACACTAATGATTAGTCTTCTTCATACATAATATTCGGAATATTAACACTAAAATGCCACAAGGAGTTTGAACTACCCTGGTTTACCTCAAACAGTTTTCTGTAAAACATTTTCAGGATtagtattcacatcctacctaaAATTGTGCATGCACAGAAACTAAATCTTTCACGCCAAGGGAGGTTTAAGTTGAATGCAGGTATCTGAAACGACGATTGAGAACGTTGCTTGAGAGGAAACTGCAGCAGCCACAGAAGCATCACTGTATATACAGCGTATGAAGTAAAAAGGGGGTCGGAGTTAGATAGCCATCTCCCTATGTCAATGGAAACCTTGGATGGTTTCCCCAACACCATGTAAAGTCCATCCCTATGGTCAAACGGAGACAGGGGTGAGGGGGTCAGTGTGTCGTGGTGGACGGTCTGGTCATCACAGGATGAAGAAGAGAATGACGACCACAAACAGAATGGCCAGTAGAATACCAATAGCACACCACTGTCGCCGGTctgcaagagaaagagagaaaaacagagcgaGCGGAAAAGAATGCGGGTGAACTGTATCAAACAATGAGAGGAGCAATTGACCTTTTTCTTGCTTTCAGACATGTTCAGACATGAGAGGTCCAACTACTAGGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474529 False 3008 lncRNA 0.39 3 56589030 56593265
TU474527 True 3062 lncRNA 0.39 2 56590174 56593265

Neighbor

gene id symbol gene type direction distance location
LOC110524093 LOC106613579 coding downstream 8537 56578635 ~ 56580493 (-)
LOC118964624 NA coding downstream 42336 56510467 ~ 56546694 (-)
LOC118964625 NA coding downstream 83592 56501839 ~ 56505438 (-)
LOC110524090 LOC106613576 coding downstream 103164 56460779 ~ 56485866 (-)
LOC110524089 LOC106613577 coding downstream 129517 56456115 ~ 56459513 (-)
si:dkey-121a11.3 LOC106613582 coding upstream 9618 56602883 ~ 56630974 (-)
LOC110522975 LOC106613586 coding upstream 110631 56703896 ~ 56711499 (-)
LOC110524100 LOC106613588 coding upstream 132909 56726174 ~ 56729842 (-)
LOC110524101 LOC106613589 coding upstream 196368 56789633 ~ 56817065 (-)
LOC100136253 LOC100526765 coding upstream 245242 56838507 ~ 56842447 (-)
G418679 LOC106613581 non-coding downstream 1375 56587182 ~ 56587655 (-)
G418622 LOC106613464 non-coding downstream 42368 56502541 ~ 56546662 (-)
G418617 NA non-coding downstream 45657 56490748 ~ 56543373 (-)
G418599 NA non-coding downstream 152563 56435991 ~ 56436467 (-)
G418590 NA non-coding downstream 166411 56422338 ~ 56422619 (-)
G418680 NA non-coding upstream 683 56593948 ~ 56594224 (-)
G418686 NA non-coding upstream 6425 56599690 ~ 56600991 (-)
G418687 NA non-coding upstream 8723 56601988 ~ 56602797 (-)
G418749 NA non-coding upstream 93819 56687084 ~ 56688572 (-)
G417527 NA other downstream 979300 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1428763 55123617 ~ 55181458 (-)
G416110 NA other downstream 2202802 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2583357 54002448 ~ 54005673 (-)
G415420 NA other downstream 2696124 53890760 ~ 53892906 (-)
G418830 NA other upstream 240761 56834026 ~ 56834595 (-)
G419603 NA other upstream 1017794 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1026789 57612040 ~ 57627128 (-)
G419714 NA other upstream 1106480 57699745 ~ 57705936 (-)

Expression


Co-expression Network