G418749


Basic Information

Item Value
gene id G418749
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56687084 ~ 56688572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474619
TTTAATTACAGTCCCTGCCAGTAAAGAATCACTGTTGCACATAAGTTACATTTACTTCAAACTTCCAGttagtttaccccccccccccaaaagcaaTTGTATTATACAAAAATGCAATCCAATTTTCACACAGTGAATTCTTTAACAAAAGAGAAATGGTATAACAGCTACATCCACATTGGAAAAATATTCTAAACATTCCTTAAGGGAGTAGAATATAAAAACAAACATTGTCTTCATCATGTTGAAGTTAAACATGTACCTTCACTTAATTAAGCAAATTCTTACAAGACAACTTGGGTCGTAGTAATCAAAAGCAATTACATTTCCCAAAGCAATTACATGTCCCAATTACAGTTCCCAAACCAATGAGTGTGTTCAGCGTGAAcaagagaaaaagaaaaaaagaaaagcgGTCTCTCCCATTGGGACATGGCCGCTCACATGGAAATCAACTCCCAATAATACCCATTGCCTGTCAGTGTGTGAGGTGTTACAATGTGGGTTAATGTTACATTTCATATCCACTTAAAAAGTGAAGTGATCCTGTGCTACTTGTTTGCAGAGGTGGGCCACCGCTTTGTAATGAATATAGGGGGAACACTGATAGGATTTAGGACAACTAAATCCAAAGAAGTAATTCATTCTGCAGTATTTAGTAAAAACTCAATGAATAACTGAAGACATTTCCTGGACAAGAAAGTAACATTCTTGGAAAATAATTAAGTTACTCGCGTTGTCTTGGTGTATGGCTATCCTACTATCAAAATGTTACTGCGTTTACCCAATACGAGTCAATCATCACACACACTTAATTTAAATTAGGAAGCATAAAATAAAAAGACTACCGGGATCTTCTCTCCACAACTTCAAAAAACAGACAACCTTCTAGAAGGGTTGGAAAAATAAAAGCCCCTTGGAAACGGCAGATGTCTTTCCTCTAATCAAACACAGACCAGACAATGCTACGACAGCCCAAACTATTTTCTTGGTTTGTATGAAAGACACAAAATGGCTATGTAAACAAACAGGTGAGTTTCCCGGTATCAATGGATCTTAAATATTAACATGCGTTGCAGTTTTACAAGTGTAGATTCTGGCACTGAACTCCTTTGTCTCAAAGGATAAGCGGTTCCTCGGCTCTGCATTGGCAATCAGCTGATTGACTCCTCTTTGCACAGCTGATATGTAGAGACCATTTAATATAAATGCTGACTCTTGAAGGAGTTTAATTAACAGCGGGAAGTTGATGTACTGTATAGACAAGCCTGTAGGTTTGCATCTTAAACGTTGAAATAGTCAACCTGCTGGAAAGCTCGTCACATTTCTTAAGCCTCAATCAGTGCGCTCAACAATAGAACGACTGAGAACAGACAGTATTCAAAAGATAGCAGTGAAGGTATGGAGTGAAGAGAATTCCCATTCAGACACATTAAAAGGATACATTTTCCCACCAATTTGTTTTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474619 True 1469 lncRNA 0.38 2 56687084 56688572

Neighbor

gene id symbol gene type direction distance location
si:dkey-121a11.3 LOC106613582 coding downstream 58177 56602883 ~ 56630974 (-)
LOC110524093 LOC106613579 coding downstream 106591 56578635 ~ 56580493 (-)
LOC118964624 NA coding downstream 140390 56510467 ~ 56546694 (-)
LOC118964625 NA coding downstream 181646 56501839 ~ 56505438 (-)
LOC110524090 LOC106613576 coding downstream 201218 56460779 ~ 56485866 (-)
LOC110522975 LOC106613586 coding upstream 15324 56703896 ~ 56711499 (-)
LOC110524100 LOC106613588 coding upstream 37602 56726174 ~ 56729842 (-)
LOC110524101 LOC106613589 coding upstream 101061 56789633 ~ 56817065 (-)
LOC100136253 LOC100526765 coding upstream 149935 56838507 ~ 56842447 (-)
gpr88 LOC106613990 coding upstream 172043 56860615 ~ 56862316 (-)
G418687 NA non-coding downstream 84287 56601988 ~ 56602797 (-)
G418686 NA non-coding downstream 86093 56599690 ~ 56600991 (-)
G418680 NA non-coding downstream 92860 56593948 ~ 56594224 (-)
G418671 NA non-coding downstream 93819 56589030 ~ 56593265 (-)
G418689 LOC106613587 non-coding upstream 9628 56698200 ~ 56702162 (-)
G418835 NA non-coding upstream 169053 56857625 ~ 56858157 (-)
G418836 NA non-coding upstream 169686 56858258 ~ 56858492 (-)
G418839 NA non-coding upstream 169977 56858549 ~ 56858751 (-)
G418867 NA non-coding upstream 226873 56915445 ~ 56915660 (-)
G417527 NA other downstream 1077354 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1526817 55123617 ~ 55181458 (-)
G416110 NA other downstream 2300856 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2681411 54002448 ~ 54005673 (-)
G415420 NA other downstream 2794178 53890760 ~ 53892906 (-)
G418830 NA other upstream 145454 56834026 ~ 56834595 (-)
G419603 NA other upstream 922487 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 931482 57612040 ~ 57627128 (-)
G419714 NA other upstream 1011173 57699745 ~ 57705936 (-)

Expression

G418749 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G418749 Expression in each Bioproject

Bar chart with 17 bars.
G418749 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021031 NA non-coding NC_007133.7 CM002906.2 16016082 ~ 16021915 (-)