G418119 (LOC106613588)


Basic Information

Item Value
gene id G418119
gene name LOC106613588
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56726185 ~ 56729821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU473915
TTCCAATATTTATTAAGAGCTAACCAAAACATTGCAACAAAAACACGTGCAAAATATGACTTGGGGTCACATGGAAGTTTGGCAAACGGATTAATTGACAACTGACAAGTGCTATTGTACTTGTCCGTGGGTGTTTAACGGTTCTAAATAACACATATTTACTAACTGAACAAACCATAGGCGGTTTCACCGAACCATTCCAGTGAGCTATTGATGATGTGTGCGCCCACAGTAAGGTCTATGTTCACTTCTTCCTTTATGAAAAATCTAAGTCATTATTGGGGTCGGTGCTTTCAACAATGGACGACAGCTATTGAGTTTATGTCAATctcttgtgtttttttttccGACCTCGTGTCCTTCCCTAATATTGGGGCATGCTGGTTTTCACAAGAGAGTGGAAACCGAGGAACAGGCAAATATGCAAAATGTTGAATGGCTGGAGCCACAGCATCTACAAAATCTAAAAGGAATCCTCCTTTATTAAGGCAGGTAAAAAGAAATCACAACTGGGAAAAGAAAGACGACCTTTGTCACACATCAACCAGAATATAAATTATTATTGCAACTACATTGCATCGCTACAAAGATAACTTGTATCGAATAagagtgaaataaaacaaattacaagTACAAAACACATTCTTAATCAAGGGGTAGAATTTACATTGTACTAGCCTTCAGAGTTAAGTCGAAGAAACACGAGCGCTTCATTAATTGTATTTCTTAAACGTTTCAATGAGAACAATTAACACTGCTAACTATTGTCACACTTCCATCAACACCTTAGAGAATCAGTAAACACCTATAATTGGTTGATGGTTTTTAATGAGCCTTTTTACAACAAGTGCTGTACTCAATACATAAAAAATACCTTTGACTAAAAGGGCTTCTTCTCAATCTGTAAAAAGAACATGGTTGAACTCAATACTGAGAAGTCAGGTTTGCACGTTGGGTGCTGTACTGTAAGTGCTTCCCCATGACATTGTCTTTTGAATATGAAAAAATTAAGTTCAGTGCTGGCCGTcctcaacgtgtgtgtgtgtgtggggggggggacacaaaCTGTAACACTCTTTCAGTTCTACTCTCTAGCATGGGCTACTGGATGGCCAGAGATATTCACTTTCTTCCAGTTTAGCCTTTTATTCTGATGAGTTTCTTCTCATGCATCAAAGACAGACCCTTCGAGAAATGATCAAACAAATGGAAACTAAAGAGGCTacttacacactgtacatagacacaACCACGGTGCAACAAAAccacatacaaacactcacactctacttatacacatatatacataatgtacacacacacacttgcacactgcgcaaaaacatatatacacacatccaCGTTCCCTAAGCAGTGGAGCTAATTCTCTCACAACAGTCCACAAGGCCCTTTAAGAAGAGGAGGTGATATTCCCAGAGGACACGACGGTCTCCCTTGGCGAGTACTCTGGCTCGTCCTTATTGGGGTGGGACGAGTTGTCCGACTTGCTTCGGCTGAACTCTGCACCCATGATGGGCCGAGAGAACTTGCCAGAGGGCCGGGTGCAGACACTGCAGCACATGAGCGTTTTTAGGAAGGCGCGGCGCATCTCGTTGCTGGTGAGCGTGTAGATGAGGGGGTTCATTGCCGAGTTGAGCACGGCCAGGGCCAGGAACCACTCGGCTTTGTACAGGATGGCACACATGCGGATGTCGCAGGCCACGTCCAGCAACAGGAGGATGAAGAGTGGAGCCCAGCAGGCAATGAAACAGCTCAGCACGATGATCACGGTCTTCAGCAGGGCCATGGACTTCTCCGAGCTCTTACTGCTAGCGCTACCCCCGCCGCGGCCGTTGGAGACCTTGCGGAACACCAGCTTGCGGCTGCGGGTGCGCACCAGGGCGTAGATGCGCGCGTACAGGACCACGATGGCCATGAGGATGACACTGAAGACGGTGGTGCAGAACAGGATGTAGGTCTTGTGGTAGAGCGGCAGTACGGTGGAGCAGCTGGGCATGCTCTGGATGCAGTTCCAGCCCATGATGGGCAGGCCGCCCAAGATGGCTGCAATCAGCCACACGGTGCTGATGAGCATGAAGACACGGCACGTGTTGCCATTGTTGTGCAACTTCATCTTCAGCATGGTGAGGTGGCGCTCAATGGCGATGGCCAGCAGGCTGAAGACTGAGGCTGCCAGGGCCACAAACATACTCCCCTCCCGGAAGAACCACTGTGTGGGGGTCAGTTTGTATGTGTTGGCACCTGACAGCAGGATGTTGGCAGTGTACACCACACCCGCCAGCAAGTCTGATAGGGCTAAGTTCCCAATAAAGTAGTACATGGGCTTGTGGAACTTCTTGGATAATGAAGCAACATACAATGATGAAAACCACAGAGTCCGCTTTGAGTCTGGAATCCTGCTCCACTTTCCGGAGCTTCCCTGTGAAGTTGTAGTGTCTGGCTATTAAGTCGGAATACATTGAGTCACCCATGGCTCTGATTTGAATTTAAATCCTATAAATTCTGTAGTCCACCACTTAGTCCACTGAGGGGCGATGGCAGGCCAAGGCACAGCTGGCAATGGTATTCCTTAGCACTTGATAGGTTGTCATTGCAGACATGCAATCAAACAATCCTTATTGCCACAGGATGTTCTGAGTATGATCTTGGACTCCATCATGAAACTCCCCTAATAGTGGTCATCAATGAGAATATTCCAAGTATCAACCTATATTCGCACAAATCCTCGAATCAGAAACTTTTTTATATTTTCCAGCGGCTGAGTTCTGTGTGTTTGCTGCGTGATTTCATGGAATGAGCACCGTGC

Function

NR:

description
sphingosine 1-phosphate receptor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473915 True 2827 TUCP 0.46 3 56726185 56729821

Neighbor

gene id symbol gene type direction distance location
serpinc1 LOC106613587 coding upstream 24029 56696618 ~ 56702156 (+)
rc3h1a LOC106613585 coding upstream 37596 56658921 ~ 56688589 (+)
stil stil coding upstream 79095 56631796 ~ 56647090 (+)
LOC110524094 LOC106613581 coding upstream 132904 56585208 ~ 56593281 (+)
LOC110524091 LOC106613578 coding upstream 200597 56505544 ~ 56525588 (+)
dph5 LOC106613590 coding downstream 50037 56779858 ~ 56788653 (+)
LOC100135807 LOC106613594 coding downstream 214022 56943838 ~ 56958165 (+)
LOC118964777 NA coding downstream 225503 56955324 ~ 56955462 (+)
LOC110524109 LOC106613599 coding downstream 286107 57015928 ~ 57037694 (+)
LOC118964761 NA coding downstream 296504 57026325 ~ 57026460 (+)
G418087 NA non-coding upstream 58579 56633853 ~ 56667606 (+)
G418076 kiaa1614 non-coding upstream 109331 56614206 ~ 56616854 (+)
G418063 NA non-coding upstream 131819 56593978 ~ 56594366 (+)
G418007 LOC106613576 non-coding upstream 247619 56477763 ~ 56478566 (+)
G417989 NA non-coding upstream 253050 56471045 ~ 56473135 (+)
G418176 NA non-coding downstream 96318 56826139 ~ 56826512 (+)
G418178 NA non-coding downstream 97850 56827671 ~ 56827880 (+)
G418181 NA non-coding downstream 99901 56829722 ~ 56829961 (+)
G418183 NA non-coding downstream 103555 56833376 ~ 56833580 (+)
G418184 NA non-coding downstream 103816 56833637 ~ 56833862 (+)
G418077 LOC106613582 other upstream 97568 56617890 ~ 56628617 (+)
G416857 NA other upstream 1400914 55324645 ~ 55325271 (+)
G415946 NA other upstream 2113043 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 2375570 54346481 ~ 54395448 (+)
G415809 NA other upstream 2395705 54330080 ~ 54330480 (+)
G418251 rtca other downstream 194103 56923924 ~ 56925176 (+)
LOC110524119 LOC106613607 other downstream 635543 57352343 ~ 57367627 (+)
G419452 NA other downstream 1154559 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 1683302 58411240 ~ 58418268 (+)

Expression


Co-expression Network