G418251 (rtca)


Basic Information

Item Value
gene id G418251
gene name rtca
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56923924 ~ 56925176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474058
ACGCAGAAATCGAAGGTTTTTATTATAACAGTGTAAGGCATTAATACCCTGAGTTATACAAGCTAAGAGGGTAATGATAGTTAATGCAATAGGGGGAAAAGGACAACGATGACCAACTCATGTGGCTGTATGTTTCTAAACCAATAATTAATTTGTTTGAATATCGAGCCACAAGGGCCATAAATCATAATATAAATAGAAGCAGCGTCAGACTATTCAGTGACGTCACAGTAGTGTATCGGCTATGAGTCCTCAAGTCTCTCCAGTGCCTCTTCTATCCACGACGGCAGATGGAGATGTCAACATAAAAGGGGTGGGGAGACAACACATGGGCGTGGCTAGAAATGAGGGTTGGTGACACCCACTCCTTGGCATTCGATGATGTAGGTGTCATTGCTGGCATTCTCATCTTCTGCCTTGGTCACTGTAAACTTAGCTGGGTGAGCTGCTCTGCCACATGGatggcagtctgtgtgtgttgggtgaCTGGGCCAGTGCGGATTCTGGAGGTGCCATTCGCCAAGGCCATGAAGAGGATTAGCTGGTCCTGGAGAAACTCATCCACACAGCCGTTGTGCCTTATATTCCTGAGCAGCATCTCTGCAGCCTCGAAGCCCACTTTGTCTGCATATACACCTGAGGCATAGGAGAAAAGCATTAGTTGTCAATTTTGTAAAAATTATTTTTTAGATCTGGGTCCGTATTTTTGGTGTCTAATAGAGCAGAAGTgggatctaggatcaggtccccaccTAGTAATTTTTTTTCATTATAATCTAAACGgcaaaactgatcccagatcagcaggCCTCTTACGGCGTCTGCATGCTTCCCAGACAAAACAGTTCGGAAGAGATTGcgcatatattatgacaacattttgtgataTTTTTGTTAGCGTTGGACTTCGGTAATGGTTTTT

Function

symbol description
rtca Predicted to enable RNA-3'-phosphate cyclase activity. Predicted to act upstream of or within RNA processing. Predicted to be active in nucleus. Is expressed in several structures, including axis; lateral plate mesoderm; nervous system; neural plate; and primordial germ cell. Orthologous to human RTCA (RNA 3'-terminal phosphate cyclase).

NR:

description
RNA 3'-terminal phosphate cyclase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474058 True 922 TUCP 0.44 3 56923924 56925176

Neighbor

gene id symbol gene type direction distance location
dph5 LOC106613590 coding upstream 135271 56779858 ~ 56788653 (+)
serpinc1 LOC106613587 coding upstream 221768 56696618 ~ 56702156 (+)
rc3h1a LOC106613585 coding upstream 235335 56658921 ~ 56688589 (+)
stil stil coding upstream 276834 56631796 ~ 56647090 (+)
LOC110524094 LOC106613581 coding upstream 330643 56585208 ~ 56593281 (+)
LOC100135807 LOC106613594 coding downstream 18667 56943838 ~ 56958165 (+)
LOC118964777 NA coding downstream 30148 56955324 ~ 56955462 (+)
LOC110524109 LOC106613599 coding downstream 90752 57015928 ~ 57037694 (+)
LOC118964761 NA coding downstream 101149 57026325 ~ 57026460 (+)
nwd1 nwd1 coding downstream 113941 57039117 ~ 57061390 (+)
G418209 NA non-coding upstream 55719 56864489 ~ 56868205 (+)
G418210 NA non-coding upstream 59700 56863974 ~ 56864224 (+)
G418201 NA non-coding upstream 70525 56853054 ~ 56853399 (+)
G418193 LOC100526765 non-coding upstream 76722 56846087 ~ 56847202 (+)
G418189 NA non-coding upstream 78502 56841426 ~ 56845422 (+)
G418264 NA non-coding downstream 16578 56941754 ~ 56941959 (+)
G418265 NA non-coding downstream 17249 56942425 ~ 56942665 (+)
G418252 NA non-coding downstream 38818 56963994 ~ 56965420 (+)
G418297 NA non-coding downstream 85010 57010186 ~ 57011064 (+)
G418295 LOC106613600 non-coding downstream 88441 57013617 ~ 57015171 (+)
G418119 LOC106613588 other upstream 194103 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 295307 56617890 ~ 56628617 (+)
G416857 NA other upstream 1598653 55324645 ~ 55325271 (+)
G415946 NA other upstream 2310782 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 2573309 54346481 ~ 54395448 (+)
LOC110524119 LOC106613607 other downstream 440188 57352343 ~ 57367627 (+)
G419452 NA other downstream 959204 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 1487947 58411240 ~ 58418268 (+)
G420634 NA other downstream 2017552 58942728 ~ 58944217 (+)

Expression


Co-expression Network