G418295 (LOC106613600)


Basic Information

Item Value
gene id G418295
gene name LOC106613600
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57013617 ~ 57015171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474102
GCCAGATCAACTCCTCCCACTCCCCCTGTTGGGCTTGGAGTCTCCATTTTCTGCTCTGCTATTTTCAGGTTGGATTTGTAGGTGTCGTTCTCTGGGTCCAACTCCAGGGCTTTTTTGTAATAACTTACAgcttctgtgtgtttgtttaaacTGGCTAGAGCCAAACCCATTCTTCCATACGCTTTGCTGTAGTTTGGGTCAATACCAATGGCAAGTTCACAGTCCTGCACTGCTCCAGCGTAGTTGCCTAGTTTGCTGTATGCAGCAGCCCTGTTGCAGTAGTAAACTCCATTCTGGGGGTTTATGGCAATAGCCTTTGAGTAGAATTCCACAGCTGCCCCATAGTTCTCAACCCTCATTTGATCATTCCCATCAGTTTTGAGTCGCTCAgcctctgcctcttcctcctcagtgGGGGAATCTGTGGCTGTGTTTATATTCACTTGGAGGGTGTTTGGATGCTTCAGTGTCGCAGAGGCAAAAATCTCTGGTAGcgtttgagtgacagctaggGTCTGGTCGTCGGTCGAGACATTGAAGGCGGTCTCCAGGCATTGGACTGCAACTTCTAAACTTTCCTGAGCATCTGATGATAGACTCCCAGAGCCCAGTTGATCATGAAGAAAGTGAATGATGGAGAAGGCAAGACGCTTTGTGTCAGTCATTTTGGATTGAGGTCCAAACCCCTTAGTAGAAAGTGTATTGTGAGGGACCCTGAAGAAGAAAATAAGAGAATATGATGTTGTTGGTACACtcggggaggcagggtagcctagtggttagagcgttggactagtaacctaaaggttgcaagttcaaatccccgagctgacaaggtacaag

Function

NR:

description
small glutamine-rich tetratricopeptide repeat-containing protein alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474102 True 843 lncRNA 0.48 7 57013617 57015171

Neighbor

gene id symbol gene type direction distance location
LOC100135807 LOC106613594 coding upstream 57295 56943838 ~ 56958165 (+)
LOC118964777 NA coding upstream 58155 56955324 ~ 56955462 (+)
dph5 LOC106613590 coding upstream 224964 56779858 ~ 56788653 (+)
serpinc1 LOC106613587 coding upstream 311461 56696618 ~ 56702156 (+)
rc3h1a LOC106613585 coding upstream 325028 56658921 ~ 56688589 (+)
LOC110524109 LOC106613599 coding downstream 757 57015928 ~ 57037694 (+)
LOC118964761 NA coding downstream 11154 57026325 ~ 57026460 (+)
nwd1 nwd1 coding downstream 23946 57039117 ~ 57061390 (+)
LOC110524113 LOC106613602 coding downstream 49741 57064912 ~ 57074729 (+)
c5h19orf25 cssa10h19orf25 coding downstream 61629 57076800 ~ 57078287 (+)
G418297 NA non-coding upstream 2553 57010186 ~ 57011064 (+)
G418252 NA non-coding upstream 48197 56963994 ~ 56965420 (+)
G418265 NA non-coding upstream 70952 56942425 ~ 56942665 (+)
G418264 NA non-coding upstream 71658 56941754 ~ 56941959 (+)
G418209 NA non-coding upstream 145412 56864489 ~ 56868205 (+)
G418323 NA non-coding downstream 24565 57039736 ~ 57039941 (+)
G418379 NA non-coding downstream 127810 57142981 ~ 57143200 (+)
G418399 NA non-coding downstream 155064 57170235 ~ 57170470 (+)
G418428 NA non-coding downstream 212683 57227854 ~ 57231401 (+)
G419132 LOC106573930 non-coding downstream 334894 57350065 ~ 57350974 (+)
G418251 rtca other upstream 88441 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 283796 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 385000 56617890 ~ 56628617 (+)
G416857 NA other upstream 1688346 55324645 ~ 55325271 (+)
LOC110524119 LOC106613607 other downstream 350193 57352343 ~ 57367627 (+)
G419452 NA other downstream 869209 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 1397952 58411240 ~ 58418268 (+)
G420634 NA other downstream 1927557 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 3679086 60694220 ~ 60695905 (+)

Expression


Co-expression Network