G418890 (LOC106613599)


Basic Information

Item Value
gene id G418890
gene name LOC106613599
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57022218 ~ 57037688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474770
TCAAGTCAATTCTTAATGTATTTTGTTCAACCTTACTTGCATATAATAGTTTAAAACATCTCCAAactaaaaaaaatcaaaaaaacacAGCACAAAAGGGTGAAATAGCATGCATCAATTCTTGTTTTCATTGTTTTTTCTAGAACATGTATGTCCCTTGTGCCCGTGTCCCAAGTAtatgattggttggggtgggcgTTTACACTGAGCTGGTTCTGATTGGTCAACAGGCACATGGAGTGTCTGCCTCCAGCTCTACCGTTAATCCTTTGCTCAGGAGGAAAGCTTCTTGCTTTGGCTCCCTCCCTAGGAAGTTCTTGAGCATAATTTCAGCGTCTTCCGAGCCTCCGGGCTTTAGGATACAGTTTCTGTAGCCCAGCCCCACCTTGGGGTTCATGATGCCCTCCTGCTTGAAGCGGGCGTAGAACATGTCCATGGAGTAGACCTCGCTCCAGAGGTAACCGTAGTACTGGGCATCGTAACCACCCGCCAGGTGGCCAAATGTGGCTGGCATGTTGGTTCCTGAGGATGCAGGCACGCCCAGTATCTCCTGGCTCAGCCGGGCGTACTCCTCGGCCGGGTCCAGCCCATTCTTGGTGTGTAAGGCCTGGTCCACTTTGGCCAGGACGATCTGACGCAGGTTAAACAGACCCGTGTTGGCCAAGCGGGACTTCATGAGTTTGTCCAGCAGGTCGTCAGGGATTGGGGCACCCGTCTTGTAGTGTTTGGACATGCGCTGCAGGGGCTCCTTCTCCCACACCCAGTTCTCCAGCATCTGCGACGGCGCCTCCACAAAGTCCCGCTCCACGTGTGTCCCGCTGAACATGGCAAAGTCCGCCTGAGCGCAGAGCTGGTGCATGACGTGGCCAAACTCGTGGAAGTAGGTCTCCACCTCGTCGTGCTGCAGCAGGGAGGGGGCGTCGGCCGTGGGCTTGCTGAAGTTGGCCACCATGGCCGCCACCGCCATCTGCCGGGTCCCGTCCGACAGCAGACAGCCGGGCTGCAGGCCAAAGCAGGCCGCGTGGCCGTACTTCCCCTCGCGTGGGAAGAGGTCCAGGTAGAACTGGCCCACCACCGTGCCCGTGGTGCGGTCCTTGACGGAGTAGAGGGTGACGTCGTCGTGCCACACGGGGGCGCCCCCCTCCACCAGGTCAAAGGTGAGGTTCAGCAACTCCTGGTAGATGTCCAGCAGGCCCCGGGTCACAACCTCCATGGGGAAGTACTCCTTCAGCTGGTTCTGGTCCACCGCGTATTGGGTCTCCTCCACCTGCGTCATGAAGTAACGTGTGTCCCAGGCGTATAACTCGCCCTTGAAGGGCAGGCCCCTCTTCTGGCACTCCTCCTTCTTCAGCTTGAGGATGACATGGCGCTCCTCCTCCCCCAGGGGCTTCAGCTTACGGGCCAGTTCCTCTAGGAAGCCGGCCACCTTCTTGCCAGACTTGGCCATGTTCATCTCCAGGACAAAGTCAGCGTGGGTGGTGAAACCCAGCAGGGAGCTCTTCTGGGCTCTCAACTGCACTAACTCCTTCAGGATGGCAGAGTTCTTCTCTTTGCACCGAGAGTTGAAGGCCTCCTCCAGCTTCTTGCGGGTCTCGGGGATGAAGCACTTCTTCATGGTGGGGAAGTAGTGGGGGTACTTGAGAGTGATTTTCAGCCTGTCCCCATCCTTCTCCAGCGAGCTCAGGAAGTCCTCAGGGAGACCGCCCAGCTCCTCTCTGGTGAAAGTCAGACTAGTGGTGTCTTCGTTCAGGTGCTTGTTGAAGTCAATGCACAGGTTGCTCAGCTTCTTCTTGATCCTCTTGACTTCATCCTGTGTTTCTTTGGGCAGGTGGAGACCATTCCTTTGGCCCAGCTTGATCAGCCTCTCCATGTACCTCTTGGACTCCTGAGTAAGCGTGTCACCGTCAACCTTGCGCTCCAGCGCCACGATCCTCTGGTAGACGTCCTCCCTCATGCTCATCTCCACATCAAACTCCGACAGCTTCTTATCGGCGTCGGTGCTGGCCGTGCGCACGTCCTTGGAGGAGGACACATGCTGGGGGAAGTCTAGCATGTTGCGGTCAACTGTGTACTCCACCTCCACATCAGCGAGAGCCTTCAGGGTGTTCTCATAGGAAACACTGGCCAGGTTCAGGGCCCCGACACAGTCATATACCTTTTTGGTCTTGGCAATAACCTCATCCGAGAGCTGATTGATTTGCTCGGGGGTCAGGTCCCAGCGCAGGCGGTTGTCAGCACAGACTGGCGCACCAGTGCCAGATGCCAAC

Function

NR:

description
thimet oligopeptidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474770 True 2267 lncRNA 0.56 13 57022218 57037688

Neighbor

gene id symbol gene type direction distance location
LOC110524110 LOC106613600 coding downstream 6278 57011622 ~ 57015940 (-)
LOC110524111 LOC106613601 coding downstream 10817 57007649 ~ 57011401 (-)
LOC110524108 LOC106613596 coding downstream 20194 56985006 ~ 57002024 (-)
LOC110524107 LOC106613595 coding downstream 48830 56963978 ~ 56973388 (-)
LOC110524106 LOC100195223 coding downstream 93018 56923916 ~ 56929200 (-)
apc2 apc2 coding upstream 40887 57078575 ~ 57114865 (-)
LOC110524120 LOC106613608 coding upstream 311282 57348970 ~ 57351000 (-)
LOC110524122 LOC106613611 coding upstream 406488 57444176 ~ 57459501 (-)
LOC110524123 LOC106613612 coding upstream 422476 57460164 ~ 57537912 (-)
plppr3b LOC106613613 coding upstream 549197 57586885 ~ 57605528 (-)
G418910 NA non-coding downstream 37554 56983438 ~ 56984664 (-)
G418908 NA non-coding downstream 39346 56982650 ~ 56982872 (-)
G418895 NA non-coding downstream 64064 56955569 ~ 56958154 (-)
G418892 NA non-coding downstream 68288 56953552 ~ 56953930 (-)
G418872 LOC100194703 non-coding downstream 89524 56932302 ~ 56932694 (-)
G418932 NA non-coding upstream 2924 57040612 ~ 57040846 (-)
G418927 NA non-coding upstream 37663 57075351 ~ 57076065 (-)
G418970 NA non-coding upstream 77315 57115003 ~ 57115204 (-)
G418971 NA non-coding upstream 78222 57115910 ~ 57116208 (-)
G418982 NA non-coding upstream 100156 57137844 ~ 57138085 (-)
G418830 NA other downstream 187623 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 310834 56703896 ~ 56711499 (-)
G417527 NA other downstream 1412488 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1861951 55123617 ~ 55181458 (-)
G416110 NA other downstream 2635990 54363286 ~ 54392411 (-)
G419603 NA other upstream 573371 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 582366 57612040 ~ 57627128 (-)
G419714 NA other upstream 662057 57699745 ~ 57705936 (-)
G420193 NA other upstream 1074699 58112387 ~ 58114060 (-)
G420421 NA other upstream 1375440 58413128 ~ 58414143 (-)

Expression


Co-expression Network