G418399


Basic Information

Item Value
gene id G418399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57170235 ~ 57170470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474215
CCTTAAGACCACCTCCCAGGTATCAATGACAAGCAGATGGCGCCTCCCGGGtagcgcagtggttaagggcgctgtacggcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgtaactggccgcgaccgggaggtccgtggggcgacgcacaattggcctagcgtcgtctgggttagggagggcttggttggtagggatgtccttgtctcatcgcgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474215 True 236 lncRNA 0.63 1 57170235 57170470

Neighbor

gene id symbol gene type direction distance location
diras1a LOC106613605 coding upstream 36574 57116340 ~ 57133661 (+)
c5h19orf25 cssa10h19orf25 coding upstream 91948 57076800 ~ 57078287 (+)
LOC110524113 LOC106613602 coding upstream 95506 57064912 ~ 57074729 (+)
nwd1 nwd1 coding upstream 108845 57039117 ~ 57061390 (+)
LOC118964761 NA coding upstream 143775 57026325 ~ 57026460 (+)
LOC110524118 NA coding downstream 30286 57200756 ~ 57264453 (+)
LOC110524119 LOC106613607 coding downstream 181873 57352343 ~ 57367627 (+)
LOC110524121 LOC106613609 coding downstream 209627 57380097 ~ 57427323 (+)
tmem259 LOC106613615 coding downstream 456835 57627305 ~ 57641111 (+)
LOC118964626 LOC106595063 coding downstream 671452 57841922 ~ 57851518 (+)
G418379 NA non-coding upstream 27035 57142981 ~ 57143200 (+)
G418323 NA non-coding upstream 130294 57039736 ~ 57039941 (+)
G418295 LOC106613600 non-coding upstream 155064 57013617 ~ 57015171 (+)
G418297 NA non-coding upstream 159171 57010186 ~ 57011064 (+)
G418252 NA non-coding upstream 204815 56963994 ~ 56965420 (+)
G418428 NA non-coding downstream 57384 57227854 ~ 57231401 (+)
G419132 LOC106573930 non-coding downstream 179595 57350065 ~ 57350974 (+)
G419135 NA non-coding downstream 187519 57357989 ~ 57358207 (+)
G419159 NA non-coding downstream 208854 57379324 ~ 57379533 (+)
G419276 NA non-coding downstream 435111 57605581 ~ 57609228 (+)
LOC100135807 LOC106613594 other upstream 212070 56943838 ~ 56958165 (+)
G418251 rtca other upstream 245059 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 440414 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 541618 56617890 ~ 56628617 (+)
G416857 NA other upstream 1844964 55324645 ~ 55325271 (+)
G419452 NA other downstream 713910 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 1242653 58411240 ~ 58418268 (+)
G420634 NA other downstream 1772258 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 3523787 60694220 ~ 60695905 (+)

Expression


Co-expression Network