G418428


Basic Information

Item Value
gene id G418428
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57227854 ~ 57231401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU474247
gtatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatatgaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattggccgtgcaaaattattcagcccccttaagttaatactttgtagcgtcaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagggaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttttgTCTTTTGcatactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaacatcttccctgtccctgctgaagaaaggcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgtcgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtccta

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474247 True 836 lncRNA 0.42 2 57227854 57231401

Neighbor

gene id symbol gene type direction distance location
diras1a LOC106613605 coding upstream 94193 57116340 ~ 57133661 (+)
c5h19orf25 cssa10h19orf25 coding upstream 149567 57076800 ~ 57078287 (+)
LOC110524113 LOC106613602 coding upstream 153125 57064912 ~ 57074729 (+)
nwd1 nwd1 coding upstream 166464 57039117 ~ 57061390 (+)
LOC118964761 NA coding upstream 201394 57026325 ~ 57026460 (+)
LOC110524119 LOC106613607 coding downstream 120942 57352343 ~ 57367627 (+)
LOC110524121 LOC106613609 coding downstream 148696 57380097 ~ 57427323 (+)
tmem259 LOC106613615 coding downstream 395904 57627305 ~ 57641111 (+)
LOC118964626 LOC106595063 coding downstream 610521 57841922 ~ 57851518 (+)
LOC110524134 NA coding downstream 643404 57874805 ~ 57906660 (+)
G418399 NA non-coding upstream 57384 57170235 ~ 57170470 (+)
G418379 NA non-coding upstream 84654 57142981 ~ 57143200 (+)
G418323 NA non-coding upstream 187913 57039736 ~ 57039941 (+)
G418295 LOC106613600 non-coding upstream 212683 57013617 ~ 57015171 (+)
G418297 NA non-coding upstream 216790 57010186 ~ 57011064 (+)
G419132 LOC106573930 non-coding downstream 118664 57350065 ~ 57350974 (+)
G419135 NA non-coding downstream 126588 57357989 ~ 57358207 (+)
G419159 NA non-coding downstream 147923 57379324 ~ 57379533 (+)
G419276 NA non-coding downstream 374180 57605581 ~ 57609228 (+)
G419278 NA non-coding downstream 379382 57610783 ~ 57611756 (+)
LOC100135807 LOC106613594 other upstream 269689 56943838 ~ 56958165 (+)
G418251 rtca other upstream 302678 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 498033 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 599237 56617890 ~ 56628617 (+)
G416857 NA other upstream 1902583 55324645 ~ 55325271 (+)
G419452 NA other downstream 652979 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 1181722 58411240 ~ 58418268 (+)
G420634 NA other downstream 1711327 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 3462856 60694220 ~ 60695905 (+)

Expression


Co-expression Network