XLOC_023432 (spata13)


Basic Information

Item Value
gene id XLOC_023432
gene name spata13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21863935 ~ 21903588 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046346
TAACATCAAACAAATGATATCACAGTCGTGGTGCTGGTGGTTTTGGCAGGCGTCCCGTGCGCAGACTATGAACCGCGTATCACAGCCGACCTTTTTTCTCCGCCCCGCAGCAATCAGCGCAACAAGTGCACTGATGCTGGCCAATACCGTCGCGACGCTGCCTGCAGTCATGGCTCTCTGGCTGAGCCCTTCCACCGAACCTATCCAAACTTTTTAACCGATACGGGTTGACCCTCGAAATCAGGTTGATTTATTTCGTTAAATTACATAGCCTGAAGGAGTTGGCGAGCCACGGACAGTCGCACTTTTTTACGGAAAGTTTTCTGCTTCTGCTAACGTTAGTTGTGTGACTACGGAGTGTTTGTTCACGCACGAGACGAAATATTGGCGTCTGTCTGCTCATCGTGTACTTTAAGATTCACCATTGGTTTGTATAACGATTTCCGCTAGGTTACTATGCGTAATTTGTCGGACATTGGACTGTCGGAGGAGTTAGTCGGGTCGATCGAAGCCGAGCAACTATTGTGACACCGGGCCAAGACACCGCTCAAGAAGTATGATAAAGGCAACTTCGTCAGACCTGCAGGGTTCCTCTCATAGCAATGACCCACAAAGTGACCCTTTCACTGAGGACCAACTGATGAATCCAAGTCTGAGGTCTGGTTGTAGAGTCCAGGTGCAACCGGTTTTATCCGAGCCTTGCTATGAAGAAAACCGGCTAAACCGACTAAAATCTCATGCCCAGTCTGTTCCTGTGATTGCCGATGGCCAGGCCAAGCTATACCCATCCAGGACAGTTCGTCTGTTTCCCACACAGGCAAAATCTGAGGATGGTGCTTCACAAAGAGGTCCACCTGTCACACCACAGGCTTGGTCTGGATTGGCTGGCTTTCGTGTCATGGGTTCTTTTAAAAAACTGCGGACTTCAGTTCTCCAAGGAATTCAGAACAGGAGCAATGCCATGGGAGCCAGTCAGGAGAGAAACTTATCCTCGGTGATTGAAGATAGTAGTAGTTTTTTGGTAACCAAACGAGAGATTTCCATCAGTCAAACCCACGAAACTGAAAAAGTGTTAAATGGGACATCTCGAACCAGAAAGACATCTTCGGTTTCAGATGAGGATGATTGTGAGGAGGTGTGTGGGTTTCAGAGGAATTCACACTTTTCTCAGAGTATCCGCAAGGCTTATGGGGCAGGACGGATATCAATGCTTGACATGGTCAACAAACAGAGCCTGTCTACTGCTGAGCCAGACCCCGTCAACACTGTGGAATCCACAGAACCTTGCAATAACCAAGACACTCAAGGAAATGTCAAGGTTCTCAAAAGACTAAGCAAAAGCGCAGATAATCTCCACGTTTTTAAGACTCATTTTAGACGCAAAGTTGCCACAGCTGAGCCACAAAACCCAGAATGTTCCAGCACTGTAATGCTTCAGAGGACCTCCAGCTCCTCATCGGTTGACTTGCAGGAACATGTTTTAGGTAGCCATCAAAGCCCCATGAGAACACGAGGACATTTGCAAAAGCTTGTCGGTAGTTTAACTGACCTCACAGTCAAGCGCAAAAACATTGCAAGCCCTTCTCCAAGAGTGCCAGTGTCACCCCTTAGTCAGCTACATGACGACTACTCGCGCAGAACTCCTTGTGTCCCCACTAGCGGGCGCCAACGTAGGCCTTCGCCTGTACCCACCAAAACCCAGCAGGACAGTACTTGCCAAACCATTCCAATTTTACACCCTGCTCCCTCTTGTCCTGCAGTCTTTATCTCTGACCTGGATGACTCTCTGGAGCCTCCTAGCAAAACCACAGCCCTTATAAGTGACTATGTACAGATGGCCGTGTCCTCATCTGAGCTGCATATTGGTGACTCGGCTTGTCCACCGGAAAAATACTGTGAACCTATGGAGTGCcatcaaaatggattaaatgatCACTACTCTCAAATTCCCCAGCAGTGCTCAAGCCCTTGTCTGAAGCCAACAGTCAATGGCAATGATGTTAACTTGCAGTGTTTATGGACTGAAGAGAGAGAAACTGATGATCTTGagGCTTCATCAGATAACCGCATCACCAGAGCGTTTCTTAAAAGTGATGAGGCCTCGACCCCTGCTGCTTCACCCATCACAAACAGCTGCTGCTCAGAATCTCCATTGGGAACTCCAACAACACCAAACTCTCCAGCTTTTGTCAGTGCCTCCCCCACCTCTGTAGTGCCCAGGAAGAGAGCAGGTCGCTCCAAACCCCGTCCAGTGTCCGACTATGGCCAGTTGGCCAGCTCAAAGTTCTGCATCCTCGAGGAGGACAGGGAGTTGGAGAATATGGACTATACTTCCCAAAAGGACTACATTAGCAATGGCAGCTACATAGAGAGCAGCAGACCTGAGAACGGTCATGTGTGCACTCAGAAAGAAAGCAGAAAAAGACGTCCAATCTCCGTTATTGGAGGAGTGGATCTGTATTCATCTCAACCTGCCGAGCAGAAGGATGACACTGAGAGTTTGCCCTCTCCGGTTTGTCGTCCTCCAGTGCCCTCTCACAGGGTGCCTCCATACCGAGCAGTTTCTGCCCGTCTGAGACCCTGCGTCTTCTCCCAAAGCACACCGATTGGCCTGGATCGGATGGGGCGTCGCAAAGGGCGCAGAGTGCTCAGTGacGGCAGCTCTGATCCAATGCTTGAGGACAGTGTGAGTGAGGAGGATGGCAGCTTTGAAGAACTGACTGAAGGAACACCATATCTTCAACCAGAAGTCGATCTTTTTACTCTCAATCAGCACATAGAGTCGGGTCGGGCCGTGTATGCAGAGGCTCTGTGGGACCATGTCACAATGGAGGAGCAGGAGCTGGCCTTTAAAGCCGGGGAGGTGATCCGAGTTCTGGATGTTCAGGAGCAGGACTGGTGGTGGGGGATGGTGGGCGATCGGGAGGCTTGGTTTCCCTCTAGCTTTGTGCGGGTTCGGGTGAATCAAGAGGATTCGAGCAGTGAGAGTGTAGAAAGCACGCCAGATACAGAGGAGCCCATCCCATCAGACTCGCACAAACAAAACCCTGAGCACCGAAAGCAGATGAGAGCCAATGTGGTCAAAGAGATTATGGACACGGAGCGAGTTTACATCAAACATCTCAAAGATATCTGTGAGGGATATATTCGTCAATGTAGAAAGCACCCTGGCATGTTCACAGACACACAGCTAAAGACAATCTTCAGCAACATCGAGGACATCTACAGGTTCCAGAGGAAGTTTCTGAAGGATTTGGAAAGGAAATACAACCCTGAAAATCCTCATCTAAGTGAGATAGGCTCCTGCTTCCTTCAACAGGTACCACTGGATTCACAAGAACAATGGAAATTAATGTTTTCCTCACAAATTGCTGATATCccatgtttttctctctctcaggaGGAAGGTTTCTCCATATACTCTGAGTACTGTAACACACATCCAGTAGCGTGTGCTGAACTGCAGCGACTGATGAAACAGAGCCGATATAAACACTTCTTTGAAGCCTGTCGTCTCCTGCAGCAGATGATTGACATTTCCATTGCTGGATTCTTGCTCACACCAGTGCAGAAGATTTGTAAATACCCTCTTCAGCTAGGAGAGCTTTTGAAATACACACCCAAAGAACACAGTGACTTTGCAGGGGTGTGTGCGGCACATAAAGCGATGAAGAATGTGGCAAGTCTGATAAATGAGAGGAAAAGGCGTCTTGAGAGCATTGACACCATCGCTCACTGGCAGGTGGCCATCCTGCACTGGGCGGGTGAGGATGTGTTAGCAAGAAGCTCAGAGCTCATCCACTCTGGCGAGTTAACTCGGATAGTACGGCCTGGAAAAACCCAGCAGCGCAGCTACTTTCTGTTTGACCATCAGCTGGTGTTCTGTAAGAAAGACGTCCTGCgcagagacctgctgcactacCGCGGCCGTATGGACACAGATCTGCTGGAGCCGAGTGACCTGCCTGATGGACGGCACACAGAGCTGGGCCTGCTGAAGAACGCCTTTCTCCTGCGCCATGCGGAGAACCTGAACGTGCTGTGTGTGCTGTGCTGCAAGAAGAGCCAGGATAAGCAGCGATGGCTACAGGCTTTTGCCCGGGAGCGTAAACGTGTACAGGAAGACCAAGAGATGGGGATGGAGATTACTGAAGCCCAGAGGAAGCAAGCAGTTCATAATGCCAGGAAATCTAAACACGGCAAAATGAAAAATATGAATTATTCTGGCCATCCTGCGCCTCCCCACCATCAGCCTCTTCATCCTCTTCATCAGAGACATGTGACTGTGCCAACCAGCGTCCCTCAGCAGCAGGTCTTTACTTTAGCAGAGCCCAAAAAGAAGCCTTCACACCTGCTGTATTCTCTCGCCCGCAGTGCCCTCTTCAGGAAATGACAAGAAGATCCAAAATAATGCAATGTCACTGGACTACACATCTGTATTATGTCAAACTCGTGCATACACAcgatatgtatatatttatatacatacacgtagatgtgtgtgtgaatgacataTGTGCCTCAGTATAAAGGCTCATTATTTAGCCTTAAGTTAGTGTGGAAAGTGTTAGTTATCTTTTTgttgtgtcattttatttgtttgttgaagAAGCTGCTTCTTATCCGTGATGTGCAACAAATGTGTGTGTCTTTTATGACAAAGAGTTGTATTCAGCTTTTTAGCAACATGATGTCTATAATTTTATTGCTTTACATGAGGCTGGAGCCTCAATAAAACACTAACATCTATCATGTCATTGTAAATAAACTTGAACCAAATGTACACTTTTTGTGCCTGCAAgtgtttaaatacataaaatgtgaAGTTTTTAAGTGTGttacaatattttgtattgtTCAAAGAGAATGGGTGTATGTATAGGATATAAGTGAACACAAGGCTCACTGTCTGCACTGCCATGGATACAGTTACACTCTGTCAGGTGGAAACGGAGAGCCTCGTGTCGTTTACCTTTATTTCGCTGCTCACCTTCACGTCGGGCTCTCAGGCAGGTATTTTCTGTGGAAACCGGTTGGTAGTATGCCGGTTTGGACGTGATAAACGATCCAAATGAATGACTGTAAGCCATGGAAACAGCGAGAGAAGAAGGCGGACAGGGCGGCGAAGAAGAGGAGGCCAAAGAAGACGCCAGAAGTGTGAGTAAGAATGCTGAAACAAATGCTGATAGATTCCTTACGACGTTATGCGTGTATTTCAGTGAAGATATTTTTACTCTCACTTAATGACCCTTGTGGTGGCCaaagtgatttattaataacCACAATAGTATAGTAACTGTAAAGCCGCAGTGTAATTTCTGTGATGGGTAAAACTTTTGACCTCTGTTGATAATACGAAGTCACTAACGTTATATGATTGGCTTTAACTTTCTACATTTTCCAAAAAGTAACTGCTGTCCTGGAAGATAGGGGTTGTCTGTAAAGTGTTTTCCAAATGACACAAATATAGATTTGTCATCAACAGTGTACGCAAGTAATTTTCAAAAAGAGTGGAAATATGgagtgaaatatgtaaaaaaaaatatataataataatagaaaaaacatTTCT
>TCONS_00046347
TGACCCTCGAAATCAGGTTGATTTATTTCGTTAAATTACATAGCCTGAAGGAGTTGGCGAGCCACGGACAGTCGCACTTTTTTACGGAAAGTTTTCTGCTTCTGCTAACGTTAGTTGTGTGACTACGGAGTGTTTGTTCACGCACGAGACGAAATATTGGCGTCTGTCTGCTCATCGTGTACTTTAAGATTCACCATTGGTTTGTATAACGATTTCCGCTAGGTTACTATGCGTAATTTGTCGGACATTGGACTGTCGGAGGAGTTAGTCGGGTCGATCGAAGCCGAGCAACTATTGTGACACCGGGCCAAGACACCGCTCAAGAAGTATGATAAAGGCAACTTCGTCAGACCTGCAGGGTTCCTCTCATAGCAATGACCCACAAAGTGACCCTTTCACTGAGGACCAACTGATGAATCCAAGTCTGAGGTCTGGTTGTAGAGTCCAGGTGCAACCGGTTTTATCCGAGCCTTGCTATGAAGAAAACCGGCTAAACCGACTAAAATCTCATGCCCAGTCTGTTCCTGTGATTGCCGATGGCCAGGCCAAGCTATACCCATCCAGGACAGTTCGTCTGTTTCCCACACAGGCAAAATCTGAGGATGGTGCTTCACAAAGAGGTCCACCTGTCACACCACAGGCTTGGTCTGGATTGGCTGGCTTTCGTGTCATGGGTTCTTTTAAAAAACTGCGGACTTCAGTTCTCCAAGGAATTCAGAACAGGAGCAATGCCATGGGAGCCAGTCAGGAGAGAAACTTATCCTCGGTGATTGAAGATAGTAGTAGTTTTTTGGTAACCAAACGAGAGATTTCCATCAGTCAAACCCACGAAACTGAAAAAGTGTTAAATGGGACATCTCGAACCAGAAAGACATCTTCGGTTTCAGATGAGGATGATTGTGAGGAGGTGTGTGGGTTTCAGAGGAATTCACACTTTTCTCAGAGTATCCGCAAGGCTTATGGGGCAGGACGGATATCAATGCTTGACATGGTCAACAAACAGAGCCTGTCTACTGCTGAGCCAGACCCCGTCAACACTGTGGAATCCACAGAACCTTGCAATAACCAAGACACTCAAGGAAATGTCAAGGTTCTCAAAAGACTAAGCAAAAGCGCAGATAATCTCCACGTTTTTAAGACTCATTTTAGACGCAAAGTTGCCACAGCTGAGCCACAAAACCCAGAATGTTCCAGCACTGTAATGCTTCAGAGGACCTCCAGCTCCTCATCGGTTGACTTGCAGGAACATGTTTTAGGTAGCCATCAAAGCCCCATGAGAACACGAGGACATTTGCAAAAGCTTGTCGGTAGTTTAACTGACCTCACAGTCAAGCGCAAAAACATTGCAAGCCCTTCTCCAAGAGTGCCAGTGTCACCCCTTAGTCAGCTACATGACGACTACTCGCGCAGAACTCCTTGTGTCCCCACTAGCGGGCGCCAACGTAGGCCTTCGCCTGTACCCACCAAAACCCAGCAGGACAGTACTTGCCAAACCATTCCAATTTTACACCCTGCTCCCTCTTGTCCTGCAGTCTTTATCTCTGACCTGGATGACTCTCTGGAGCCTCCTAGCAAAACCACAGCCCTTATAAGTGACTATGTACAGATGGCCGTGTCCTCATCTGAGCTGCATATTGGTGACTCGGCTTGTCCACCGGAAAAATACTGTGAACCTATGGAGTGCcatcaaaatggattaaatgatCACTACTCTCAAATTCCCCAGCAGTGCTCAAGCCCTTGTCTGAAGCCAACAGTCAATGGCAATGATGTTAACTTGCAGTGTTTATGGACTGAAGAGAGAGAAACTGATGATCTTGagGCTTCATCAGATAACCGCATCACCAGAGCGTTTCTTAAAAGTGATGAGGCCTCGACCCCTGCTGCTTCACCCATCACAAACAGCTGCTGCTCAGAATCTCCATTGGGAACTCCAACAACACCAAACTCTCCAGCTTTTGTCAGTGCCTCCCCCACCTCTGTAGTGCCCAGGAAGAGAGCAGGTCGCTCCAAACCCCGTCCAGTGTCCGACTATGGCCAGTTGGCCAGCTCAAAGTTCTGCATCCTCGAGGAGGACAGGGAGTTGGAGAATATGGACTATACTTCCCAAAAGGACTACATTAGCAATGGCAGCTACATAGAGAGCAGCAGACCTGAGAACGGTCATGTGTGCACTCAGAAAGAAAGCAGAAAAAGACGTCCAATCTCCGTTATTGGAGGAGTGGATCTGTATTCATCTCAACCTGCCGAGCAGAAGGATGACACTGAGAGTTTGCCCTCTCCGGTTTGTCGTCCTCCAGTGCCCTCTCACAGGGTGCCTCCATACCGAGCAGTTTCTGCCCGTCTGAGACCCTGCGTCTTCTCCCAAAGCACACCGATTGGCCTGGATCGGATGGGGCGTCGCAAAGGGCGCAGAGTGCTCAGTGacGGCAGCTCTGATCCAATGCTTGAGGACAGTGTGAGTGAGGAGGATGGCAGCTTTGAAGAACTGACTGAAGGAACACCATATCTTCAACCAGAAGTCGATCTTTTTACTCTCAATCAGCACATAGAGTCGGGTCGGGCCGTGTATGCAGAGGCTCTGTGGGACCATGTCACAATGGAGGAGCAGGAGCTGGCCTTTAAAGCCGGGGAGGTGATCCGAGTTCTGGATGTTCAGGAGCAGGACTGGTGGTGGGGGATGGTGGGCGATCGGGAGGCTTGGTTTCCCTCTAGCTTTGTGCGGGTTCGGGTGAATCAAGAGGATTCGAGCAGTGAGAGTGTAGAAAGCACGCCAGATACAGAGGAGCCCATCCCATCAGACTCGCACAAACAAAACCCTGAGCACCGAAAGCAGATGAGAGCCAATGTGGTCAAAGAGATTATGGACACGGAGCGAGTTTACATCAAACATCTCAAAGATATCTGTGAGGGATATATTCGTCAATGTAGAAAGCACCCTGGCATGTTCACAGACACACAGCTAAAGACAATCTTCAGCAACATCGAGGACATCTACAGGTTCCAGAGGAAGTTTCTGAAGGATTTGGAAAGGAAATACAACCCTGAAAATCCTCATCTAAGTGAGATAGGCTCCTGCTTCCTTCAACAGgaGGAAGGTTTCTCCATATACTCTGAGTACTGTAACACACATCCAGTAGCGTGTGCTGAACTGCAGCGACTGATGAAACAGAGCCGATATAAACACTTCTTTGAAGCCTGTCGTCTCCTGCAGCAGATGATTGACATTTCCATTGCTGGATTCTTGCTCACACCAGTGCAGAAGATTTGTAAATACCCTCTTCAGCTAGGAGAGCTTTTGAAATACACACCCAAAGAACACAGTGACTTTGCAGGGGTGTGTGCGGCACATAAAGCGATGAAGAATGTGGCAAGTCTGATAAATGAGAGGAAAAGGCGTCTTGAGAGCATTGACACCATCGCTCACTGGCAGGTGGCCATCCTGCACTGGGCGGGTGAGGATGTGTTAGCAAGAAGCTCAGAGCTCATCCACTCTGGCGAGTTAACTCGGATAGTACGGCCTGGAAAAACCCAGCAGCGCAGCTACTTTCTGTTTGACCATCAGCTGGTGTTCTGTAAGAAAGACGTCCTGCgcagagacctgctgcactacCGCGGCCGTATGGACACAGATCTGCTGGAGCCGAGTGACCTGCCTGATGGACGGCACACAGAGCTGGGCCTGCTGAAGAACGCCTTTCTCCTGCGCCATGCGGAGAACCTGAACGTGCTGTGTGTGCTGTGCTGCAAGAAGAGCCAGGATAAGCAGCGATGGCTACAGGCTTTTGCCCGGGAGCGTAAACGTGTACAGGAAGACCAAGAGATGGGGATGGAGATTACTGAAGCCCAGAGGAAGCAAGCAGTTCATAATGCCAGGAAATCTAAACACGGCAAAATGAAAAATATGAATTATTCTGGCCATCCTGCGCCTCCCCACCATCAGCCTCTTCATCCTCTTCATCAGAGACATGTGACTGTGCCAACCAGCGTCCCTCAGCAGCAGGTCTTTACTTTAGCAGAGCCCAAAAAGAAGCCTTCACACCTGCTGTATTCTCTCGCCCGCAGTGCCCTCTTCAGGAAATGACAAGAAGATCCAAAATAATGCAATGTCACTGGACTACACATCTGTATTATGTCAAACTCGTGCATACACAcgatatgtatatatttatatacatacacgtagatgtgtgtgtgaatgacataTGTGCCTCAGTATAAAGGCTCATTATTTAGCCTTAAGTTAGTGTGGAAAGTGTTAGTTATCTTTTTgttgtgtcattttatttgtttgttgaagAAGCTGCTTCTTATCCGTGATGTGCAACAAATGTGTGTGTCTTTTATGACAAAGAGTTGTATTCAGCTTTTTAGCAACATGATGTCTATAATTTTATTGCTTTACATGAGGCTGGAGCCTCAATAAAACACTAACATCTATCATGTCATTGTAAATAAACTTGAACCAAATGTACACTTT

Function

symbol description
spata13 Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human SPATA13 (spermatogenesis associated 13).

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-25 Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human SPATA13 (spermatogenesis associated 13).

Ensembl:

ensembl_id ENSDARG00000062837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046346 False 5572 mRNA 0.47 13 21863935 21903588
TCONS_00046347 True 4480 mRNA 0.48 14 21864718 21903360

Neighbor

gene id symbol gene type direction distance location
XLOC_023431 CR352265.3 coding downstream 15990 21841238 ~ 21847945 (-)
XLOC_023430 CR352265.1 coding downstream 44925 21813127 ~ 21819010 (-)
XLOC_023429 flt1 coding downstream 55116 21750810 ~ 21808819 (-)
XLOC_023428 flt3 coding downstream 150052 21691939 ~ 21713883 (-)
XLOC_023427 urad coding downstream 174789 21687276 ~ 21689146 (-)
XLOC_023433 c1qtnf9 coding upstream 2129 21905717 ~ 21914276 (-)
XLOC_023434 tagln3b coding upstream 13424 21917012 ~ 21934571 (-)
XLOC_023435 acot9.2 coding upstream 35153 21938741 ~ 21952164 (-)
XLOC_023436 acot9.1 coding upstream 56120 21959708 ~ 21973365 (-)
XLOC_023437 AL627129.1 coding upstream 59464 21963052 ~ 21963168 (-)
XLOC_023665 dre-mir-735 misc upstream 16274373 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 1332122 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1676505 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1678910 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1800885 20060691 ~ 20063050 (-)
XLOC_023397 CR381686.1 non-coding downstream 1809678 20032331 ~ 20054257 (-)
XLOC_023442 NA non-coding upstream 150221 22053809 ~ 22066831 (-)
XLOC_023445 AL590147.1 non-coding upstream 405356 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 468398 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 975353 22878941 ~ 23218030 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04773554_04792048 SPATA13 coding CI01000018 null 4773226 ~ 4792048 (-)