G419145 (LOC106613607)



Basic Information


Item Value
gene id G419145
gene name LOC106613607
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57360356 ~ 57361105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU475041
caaaaatcaagggatctgaatactttccgaaggcacgtATATGAAATACAAGCTGAGTAGCTCTTATTTATAACTCAATTTATTGCACACCCACGACATAATACCACAGACATTGAATAACATTATTCTTGTTGGATGTACAGGCTGGAGGTacctaatcaaatcaaagtgcatttgtcacgtgcgccgaatacaacagcacagtgaaaaaggtattaggtgaacaatagataagtaaataaataaacacaatagTCTCACACAGGTTGAAGATAGAAATGTAGGTAAGAACACACACAGCAGTCTCACCAGAGAGTCCTTGGGCGGTTGCACTGGAGGAAAGAAGGAAAAGGGGTGATTGTTTGGTACCTCTCGCCGGCCACTTGGCTTCTTCTTAACCCCATGCTCCTTGCCAAAGTCATAGCTGCTTTTGCCATAGTCTTTTCCttGAGCAAACTTAGGTGGCTGAGGTGAGGACAGCTCCTCTCGTCCCTCTTGTTGAGGTGTCTTCCAATCTCTTTCCATCCTCTTCCAATCAGCAATGTTGTTACTAGTGGAGCTGAACCCATCAACAGC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU475041 True 576 lncRNA 0.43 2 57360356 57361105

Neighbor


gene id symbol gene type direction distance location
LOC110524120 LOC106613608 coding downstream 9356 57348970 ~ 57351000 (-)
apc2 apc2 coding downstream 245491 57078575 ~ 57114865 (-)
LOC110524110 LOC106613600 coding downstream 344416 57011622 ~ 57015940 (-)
LOC110524111 LOC106613601 coding downstream 348955 57007649 ~ 57011401 (-)
LOC110524108 LOC106613596 coding downstream 358332 56985006 ~ 57002024 (-)
LOC110524122 LOC106613611 coding upstream 83071 57444176 ~ 57459501 (-)
LOC110524123 LOC106613612 coding upstream 99059 57460164 ~ 57537912 (-)
plppr3b LOC106613613 coding upstream 225780 57586885 ~ 57605528 (-)
LOC110524128 LOC107602773 coding upstream 250935 57612040 ~ 57627128 (-)
grin3bb LOC106613616 coding upstream 280115 57641220 ~ 57750792 (-)
G419144 NA non-coding downstream 178 57359854 ~ 57360178 (-)
G419143 NA non-coding downstream 1737 57358328 ~ 57358619 (-)
G419140 NA non-coding downstream 6206 57353948 ~ 57354150 (-)
G419125 NA non-coding downstream 16426 57343614 ~ 57343930 (-)
G419117 NA non-coding downstream 24785 57335370 ~ 57335571 (-)
G419147 NA non-coding upstream 902 57362007 ~ 57362528 (-)
G419149 NA non-coding upstream 7385 57368490 ~ 57368727 (-)
G419526 NA non-coding upstream 17946 57379051 ~ 57379359 (-)
G419673 LOC106613615 non-coding upstream 277183 57638288 ~ 57641101 (-)
G418830 NA other downstream 525761 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 648972 56703896 ~ 56711499 (-)
G417527 NA other downstream 1750626 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 2200089 55123617 ~ 55181458 (-)
G416110 NA other downstream 2974128 54363286 ~ 54392411 (-)
G419603 NA other upstream 249954 57611059 ~ 57611567 (-)
G419714 NA other upstream 338640 57699745 ~ 57705936 (-)
G420193 NA other upstream 751282 58112387 ~ 58114060 (-)
G420421 NA other upstream 1052023 58413128 ~ 58414143 (-)

Expression



Co-expression Network