G419278


Basic Information

Item Value
gene id G419278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57610783 ~ 57611756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475191
atactttcgcaaggcactgtatatgttctaCAGAATACATACGATATCTCACTGAACATTCTGTAATGTTGTACCCTGCTGTAGGGCCACGATACTAATATAACCCTGAACATCGgatggatactatctactgtagATACACTCTTTATACCACCTAATACCACACACCCAGTTATCCCCATAATTAGCTTCACTAAGTCACTCAGGTCATTCATTTCTCTAAGAGATATATTAACAGAACTGaatacaactttattgtccaACAGGAGATAGAGAGGATAAATTGGCCTTTGGCTTCATCTCAGAAAGGTGCGCCCATCAAGGTGACCTGATTGTGTGGAGACCTCATGAGGCGAGGGCAAGCAGCCAACCACAACAGAGCGAAAGACAGAAGGAGGGCACAGAGTTCACCTGAAGGGGTTTGGTTGAGGTGAGCAGTGTGCCAATGGTAGGAGGCGCTATTTTGGTGGTTGAATATAGAGGGGAGTTCGTCTGATATATTCTTTTGTTTTATGGGGTGAACCAAGCGGTTCTTCTGATAGTATGTAAAGCAGTGGTCCATAGGAAGTATTAATTTGAGTGCAAATTGCTTTGACTTTATACTATTGGGAAATAGACAGGCAGTTCTCTCTTGTAAAATTGATTCAGAGACATTCCCTGTGTAAATCAATCTTATTTCACTTGGACCTGGACAAAATTGTGTTTGAAAATGATATAGATGAAAGTACATTTTAAATCATGCTTTGAAATGTTTAAATCTTCTggtcaatttaaataaaaacCGACACTCTTTACCCTGAAT
>TU475192
atactttcgcaaggcactgtatatgttctaCAGAATACATACGATATCTCACTGAACATTCTGTAATGTTGTACCCTGCTGTAGGGCCACGATACTAATATAACCCTGAACATCGgatggatactatctactgtagATACACTCTTTATACCACCTAATACCACACACCCAGTTATCCCCATAATTAGCTTCACTAAGTCACTCAGGTCATTCATTTCTCTAAGAGATATATTAACAGAACTGaatacaactttattgtccaACAGGAGATAGAGAGGATAAATTGGCCTTTGGCTTCATCTCAGAAAGGTGCGCCCATCAAGGTGACCTGATTGTGTGGAGACCTCATGAGGCGAGGGCAAGCAGCCAACCACAACAGAGCGAAAGACAGAAGGAGGGCACAGAGTTCACCTGAAGGGGTTTGGTTGAGGTGAGCAGTGTGCCAATGGTAGGAGGCGCTATTTTGGTGGTTGAATATAGAGGGGAGTTCGTCTGATATATTCTTTTGTTTTATGGGGTGAACCAAGCGGTTCTTCTGATAGTATGTAAAGCAGTGGTCCATAGGAAGTATTAATTTGAGTGCAAATTGCTTTGACTTTATACTATTGGGAAATAGACAGGCAGTTCTCTCTTGTAAAATTGATTCAGAGACATTCCCTGTGTAAATCAATCTTATTTCACTTGGACCTGGACAAAATTGTGTTTGAAAATGATATAGATGAAAGTACATTTTAAATCATGCTTTGAAATGTTTAAATCTTCTggtcaatttaaataaaaacCGACACTCTTTACCCTGAATTGGCTAGACAAGATCTTTCAAAATTGGCCAGACTAGACAGTCAATTTCATTCCAGCTATTTCAGGGACTGAGATATGACTTCAAAGAAAATAATTTGTGTTTGAAAAATCTCTAGTCCTTTTTTATTAAACAGAATCTCTTCTGGGAGTGGGAAGTAAAACCCTTCATTTTG
>TU475193
atactttcgcaaggcactgtatatgttctaCAGAATACATACGATATCTCACTGAACATTCTGTAATGTTGTACCCTGCTGTAGGGCCACGATACTAATATAACCCTGAACATCGgatggatactatctactgtagATACACTCTTTATACCACCTAATACCACACACCCAGTTATCCCCATAATTAGCTTCACTAAGTCACTCAGGTCATTCATTTCTCTAAGAGATATATTAACAGAACTGaatacaactttattgtccaACAGGAGATAGAGAGGATAAATTGGCCTTTGGCTTCATCTCAGAAAGGTGCGCCCATCAAGGTGACCTGATTGTGTGGAGACCTCATGAGGCGAGGGCAAGCAGCCAACCACAACAGAGCGAAAGACAGAAGGAGGGCACAGAGTTCACCTGAAGGGGTTTGGTTGAGGTGAGCAGTGTGCCAATGGTAGGAGGCGCTATTTTGGTGGTTGAATATAGAGGGGAGTTCGTCTGATATATTCTTTTGTTTTATGGGGTGAACCAAGCGGTTCTTCTGATAGTATGTAAAGCAGTGGTCCATAGGAAGTATTAATTTGAGTGCAAATTGCTTTGACTTTATACTATTGGGAAATAGACAGGCAGTTCTCTCTTGTAAAATTGATTCAGAGACATTCCCTGTGTAAATCAATCTTATTTCACTTGGACCTGGACAAAATTGTGTTTGAAAATGATATAGATGAAAGTACATTTTAAATCATGCTTTGAAATGTTTAAATCTTCTggtcaatttaaataaaaacCGACACTCTTTACCCTGAATTGGCTAGACAAGATCTTTCAAAATTGGCCAGACTAGACAGTCAATTTCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU475191 False 802 lncRNA 0.40 1 57610783 57611584
TU475192 False 974 lncRNA 0.39 1 57610783 57611756
TU475193 True 851 lncRNA 0.40 1 57610783 57611633

Neighbor

gene id symbol gene type direction distance location
LOC110524121 LOC106613609 coding upstream 183460 57380097 ~ 57427323 (+)
LOC110524119 LOC106613607 coding upstream 243156 57352343 ~ 57367627 (+)
LOC110524118 NA coding upstream 346330 57200756 ~ 57264453 (+)
diras1a LOC106613605 coding upstream 477122 57116340 ~ 57133661 (+)
c5h19orf25 cssa10h19orf25 coding upstream 532496 57076800 ~ 57078287 (+)
tmem259 LOC106613615 coding downstream 15549 57627305 ~ 57641111 (+)
LOC118964626 LOC106595063 coding downstream 230166 57841922 ~ 57851518 (+)
LOC110524134 NA coding downstream 263049 57874805 ~ 57906660 (+)
sid1 NA coding downstream 290346 57902102 ~ 57903229 (+)
LOC110524136 LOC100136537 coding downstream 417005 58028761 ~ 58030894 (+)
G419276 NA non-coding upstream 1555 57605581 ~ 57609228 (+)
G419159 NA non-coding upstream 231250 57379324 ~ 57379533 (+)
G419135 NA non-coding upstream 252576 57357989 ~ 57358207 (+)
G419132 LOC106573930 non-coding upstream 259809 57350065 ~ 57350974 (+)
G418428 NA non-coding upstream 379382 57227854 ~ 57231401 (+)
G419300 NA non-coding downstream 41408 57653164 ~ 57653374 (+)
G419301 NA non-coding downstream 43835 57655591 ~ 57655810 (+)
G419307 NA non-coding downstream 48335 57660091 ~ 57660303 (+)
G419326 NA non-coding downstream 76075 57687831 ~ 57688070 (+)
G419338 NA non-coding downstream 88009 57699765 ~ 57700039 (+)
LOC100135807 LOC106613594 other upstream 652618 56943838 ~ 56958165 (+)
G418251 rtca other upstream 685607 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 880962 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 982166 56617890 ~ 56628617 (+)
G419452 NA other downstream 272624 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 801367 58411240 ~ 58418268 (+)
G420634 NA other downstream 1330972 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 3082501 60694220 ~ 60695905 (+)
G423922 NA other downstream 4109781 61721537 ~ 61722024 (+)

Expression


Co-expression Network