G419673 (LOC106613615)


Basic Information

Item Value
gene id G419673
gene name LOC106613615
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57638288 ~ 57641101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475614
AAAGAATGCTTCTACTGCACTTGGTTTACTGAACagttaaatacatttgaatgagaGGAATCTAGTCCATCACAGATCGAAGGGTTCATTTATCATTGTCTAAAATTAACTACAAATGGATAGCAACTGTTGCAAGGCTACAATCATCCCGTTTTCTCTCACAGAACGGAATATAGGCACAGATAAAGAAACTGATCAGAAAACCTCATTGACggaacattttttttcttctcttatCGGTAAAAGCTTCCCCTAGAATGAACTCAAAAGACTTCTTTAAACTGACTTGTCATATTGCACAATTTGGACAACCTTCTCATCCCATAACCACATCCTCTGTCCTGCCCGTTGCATAGCCTTGACTACATCTCCACACAACTCACTGAGCAGAAATTACGCTAACCCCTCGTGTCTCAATAGAACAATGATATTTTGCGAAATGTCCCTTGATTATCGCCATTCTGTTGAGAAACAACCCATTTTCCTCTGATATGAGGCCAACAAGGGCAATCTCAACTTGCACTAATCTCTCATTCGGAATCATATAAGGTATCATTCAAAATAAAAGCTCTCTGGTCAGATTGTTCTCAATTCAAACAGCTGAGGACGAAGACGCCGACCACACCTGTCAATGACTTCTGATCCTTCCCTGACCGTTTATGTCTATAGAGTTACAATGTCAAAACCTCTCGACTTGTGTTATACCCTGTCCATGTTAGTACCTTGTTCAGCTAGTTCCAGAAAAGGGGAAGCATGATGCATGTCAGGTCCATCTGAGTACAGGAAAACAATGTTTGTCTTTAGACCCTAGCAAATACAACTAGCATCACAGTAGCATTTTACAAGCCAGTTATTTAGTCTCCCGTGAGCTATGGAATAGAGCAGTGGCCACAACAGCCGTGGAAGGTTTTTAACATTGTGCAGCTTTATCATAATCTCCTGAAGGTTTTGAAACAAGAACATTGATGAAAGATAAAATATTAATCCTAAATATATTTTTCTACAAAATTAAATGCCCCCTAGGGTCCAATATATGCTTTTTCTTCATAACTATCCAGTTGGGCAGCTGAATGGTAGATCGCAATGACAAATGTAATGGAGATGGGTTCGGCTGGGTACAATGGCTTTACCCTGAAGCTGTTCAACATCGCCTGGTATTGTCTTGTGCCAGTCTGGGGCAAAGATCTGTGTGTTTGAGCTTGAAATGGGCCTCAGTCAGCTGACGCCATGAACCAGAAAACTTCCTTGTGATGAAGCGCATTTCTTTTTTACAGTCACATGCTCCTCTTTTGGAATACAGTCTAAGGGGCCATGGGAACAAATATTGACTTAAATCATTTTGTTTGATGTGCACATGACTAGTGAAGCGATTCTAATGTGAAAGACAAATACAAAACATGGTGATGAGAGAATTGGTTGGCTAGCAGTACACAGAAAAGCTCCCAGGGGCGGACCAATGACGCAGTTTCACTCAAAAGGGGTTAAGATGAGAGAAACCGCAATGATGGCCGCTCTTCTTCAGCTCAAGAAGTACGGGGAGCAACTGCCAATCGTCATAAGAGAAGCGGACAGGGGGGAAAAAATCTGAACAAGAGCAAGCAGGTCTGCTTAACACTCCAAAGAATGGATGAAAACTCCATTTCCCATGATGCTCCACTCAGGGCTAGTGCTAGCTTGTGGAGCCGGTTGCCAGTTACGACTACAACCTCCAAACTGGAGGAGTTGAGCGCCTGTGAAAAAGTGGTGCGTGAAGTATCTACACAAACCACAGCAACATTACTAGCCTACAGTTCTGAAAGAAAAATGACCAACTCGGATACTAGAGCAACTCAGAAACACAGGGTTGTATTCGTATTTTCTTTTTCTGGGTTCGAGAACCAGATGGAATGAATGACTAGGATACGAGTACGTGTTACAGCCTTGTTATGACTGGTATGGTAGTCAACTGTGCTCTCAAAAAGAAAACGCATAGAGTACACTGCCATTTCCAAAGCCCGTCGAGACACCTAACCAAAAGAAACATCCTTTAAGGAATTGTACATCAACGCAATAGGATTGCCGCCTCTCTATTTTACAAATCAACTTTCAATCATAAACACAAATATCACATGGCAAAATGTCATGGTAGCCTTTCACAAACGATTCCACACCTTTGAAGCAAAGTTGGTGTATCACACATAATTTGAGCAAAAACTCTGCGACGGATGGAAAAAGTCACTGTCCCACTAAGGATGGGGAAACTAAAAGCAAAACAAAACATTATCGTAGCAGAGATtctagaggagagtggaggggggcGCCTTTTCTTAGCTTTCCATCCCTCGCTTCTCCTTGGTGTCGTAAGAATGAGATTACAGTAATATAGCCACGGCGGCAATCTTGCGGTGTTGGAAGAGGAATTGAGGGGGGAGAAGACATGTTGCCTCTGCGTGTGGGAGCATACGTGAGTTGGAGTAGGGGGGCTCAGGACGGAGTGGGGCTGGGGGGTTCCTCTGTCTTGGGCTCCCAGTCTGTGGGGCTTTGCCCAGGGCTCTCTGGCTCCCCTGCCCTACTGCAGtctgtgtgtggaggaggagaaggaggaaggaggaagggacTGACACTAGAGAGACTAgtctctgcttcctgaagtcctcccattggaggagagggaggaagaggcggGCCTAAGCCAGCTGCACTGCTGCTGCAGGCCCCTACGGTTTTGATTTCCACTGGAACCAAGCTGGGATTGAGGCCATCtgtaccctctcctcc

Function

NR:

description
membralin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475614 True 2757 lncRNA 0.44 2 57638288 57641101

Neighbor

gene id symbol gene type direction distance location
LOC110524128 LOC107602773 coding downstream 11160 57612040 ~ 57627128 (-)
plppr3b LOC106613613 coding downstream 32760 57586885 ~ 57605528 (-)
LOC110524123 LOC106613612 coding downstream 100376 57460164 ~ 57537912 (-)
LOC110524122 LOC106613611 coding downstream 178787 57444176 ~ 57459501 (-)
LOC110524120 LOC106613608 coding downstream 287288 57348970 ~ 57351000 (-)
grin3bb LOC106613616 coding upstream 119 57641220 ~ 57750792 (-)
wdr18 LOC106613619 coding upstream 130535 57771636 ~ 57862459 (-)
LOC110524131 LOC106613618 coding upstream 225461 57866562 ~ 57874864 (-)
LOC110524132 LOC106613620 coding upstream 235227 57876328 ~ 57881714 (-)
LOC110524135 arrdc2 coding upstream 348644 57989745 ~ 57998440 (-)
G419526 NA non-coding downstream 258929 57379051 ~ 57379359 (-)
G419149 NA non-coding downstream 269561 57368490 ~ 57368727 (-)
G419147 NA non-coding downstream 275760 57362007 ~ 57362528 (-)
G419145 LOC106613607 non-coding downstream 277183 57360356 ~ 57361105 (-)
G419687 NA non-coding upstream 20224 57661325 ~ 57661537 (-)
G419702 NA non-coding upstream 42230 57683331 ~ 57683565 (-)
G419712 NA non-coding upstream 52838 57693939 ~ 57694248 (-)
G419719 NA non-coding upstream 65276 57706377 ~ 57706695 (-)
G419603 NA other downstream 26721 57611059 ~ 57611567 (-)
G418830 NA other downstream 803693 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 926904 56703896 ~ 56711499 (-)
G417527 NA other downstream 2028558 55608835 ~ 55609730 (-)
G419714 NA other upstream 58644 57699745 ~ 57705936 (-)
G420193 NA other upstream 471286 58112387 ~ 58114060 (-)
G420421 NA other upstream 772027 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 1385002 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1491769 59131152 ~ 59138429 (-)

Expression


Co-expression Network