G419380


Basic Information

Item Value
gene id G419380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57771648 ~ 57773938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475303
gtttttatttcccATGATTTCAGAAAGGTACAAAAACACAAGcatacaaaaacacaaaaaaagtaCAAATCCAGTTGGtctgtttgtctttattagaGGAACAAAACAATTAATCCCCCACACTGAACACTTCACTCTTCCAATCCTCAGAAGCGCCATCTCACGTGCTGCCCCCCCCCAACGGTGAGTTAATTGGATTCAATGTTGGGTTTCGTGTAAGTCGCTCTAGAAGTTCTAAAGCTGGGATGGGCAACTGATGGGGGTcccaaaaaaatctgaactcaccATGAGAGGCCGCAGTGGCTCGTGGGTCtgtgtacccacatccatacccacacatgcagtcaagAGCCGGCcttagccttttgggggccctaagtggAATTGTGTTAAGGGTCCCTGCCTACCTTGCAATCAAAATATTTTTGCAGGCCTCCCTTGACACCAGAGACAAAACATTGACGTTTtagagttaatttcctgcaattctacacattttgccgtgGGGCATAGCAATTACTTCCCAATGTAATGCAATTCTATTAATTTTGCCATGGAGCGGAGAAAAATtggcagttttacagctaatttcctgcaattctacacgttGCCATAGTTGCTATACAAATGTTTGCAGTTtctaatatgatatctgagttagaatgactaacaaaatcaaaggGGGGCCCTCCGGTTGTTAAATCAACTATGATTAGAACACGTTTATATAGCTGGCTGGACTAATTTACCAATCCAatttttagctgacatgggctaattgtgtgactgtcagtgactgacaaaaGAGGAAAACTGCTCATGCAAAACCACATTTTGAAATGGTACTttatgtattctactattctgactcttaacagtaaattgagaccccAATTGAGATTATTTTTTACAACTACGGGCCTACAAAAGGAGAGTTGCCAATCCCTGTTCTAAAGCCATGGCTCTCTCTGGACAGGAGGGCTGCTGTCCTTATCAGTTCCCTCTTCTCTACCAAAGAGGCACACACATTGTCCTGATCTCATCAAAGCAGGCAAATGAGAAAAAGACGAAAATCAACCACTATTTCTATGGCGCTGCCTCTAATTTAGTGCCCCGGGTGGAGAATTAGCAGTGATGAGAGGAAGAGCGATTTCTGGAGGATTCTGAAAACTGATTCTGCAGTTGTATAGCGTTGCTGGGCACTGCACAACCAAATCCATGATTGCTACAGGCACAGAAAAACTGTACACAGTCTTCAGGCTAGTTCCTCAGGGTTAATCAAACATATTCCTCTACTCTTCCgtattgttttttttaacacCACCGTGAGCTGTTTTTAGCCAAACAGGTTAACACAGAGTATGTGCATATTGCTAATGGGAAAACAGTTTTGCTTGACAGAAGGTGAAGGGGACCTATGAACCATGGTGGTCATACCTATTGGGTGACTGAAATTAACACCAGCCTCATCGATGCTAAGCCAAACACACCTGGGTGCACATCATGTCCTTGTCACATAAATTCTTAGAATCTATTAACTGGTTGAATGCTATAGAACTTGGCCAAGCCGAGGTAaacaaaaatgaaaataaaaaggaGAGGATAATGCAGGAATCTGAGGTTAGCCAGATTACAAAAAGGATGAAAGGTCAGAGGGCACTAACTGGATACTGTTACACCGATTTTTGGCTGATGGGATTTTTGGCCTTATAGGCAGTGGTGATGAGTGTGAAGGAACAGGGCTGCGAGTTGAGGAGGTCAAGGGACGTCAATATAGCGCTAAGATCAATTATGTCGCTCTATCTGGCTGCACTTGACTACTGCAAGTAGCCTGTGGCTAACATTGAACATGTCGCACAAACAAGGTGAGCACTTTTTTTTCATGTTAAATTAACTCCTTTATCCTAAATATGGCGAGGGATCATGATACAAGCAATGCGGTCCATGGTATAACTTTAACACCTGAAGTCCTGCTGAACATACACTCTCCCTTACAAAACAAACACTATGAATGACACACACTAACTTATATTTCCCTAGCCTACCGGTCTGTAGTGAGGGGGGGCTTGCAGTGTCTTCCCTCCCCCTAGTAGGGTCCCTGCTGGTGGGATGGGGGAGCCGTGGCCAGGGGTGGTGGCTCTTCTCTAGCTGGGCTTGGTGAGGAGCTGTGTGGAGAAGTCGTACAGGTCCTTGTTAACCTTCTTCAGCGTTCTCACTTCCTCCTCCAGCTCCGACACACGCACCTTGGTGTTCTCGCCATCACCAAAC

Function

NR:

description
PREDICTED: WD repeat-containing protein 18-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475303 True 2268 lncRNA 0.44 2 57771648 57773938

Neighbor

gene id symbol gene type direction distance location
tmem259 LOC106613615 coding upstream 130537 57627305 ~ 57641111 (+)
LOC110524121 LOC106613609 coding upstream 344325 57380097 ~ 57427323 (+)
LOC110524119 LOC106613607 coding upstream 404021 57352343 ~ 57367627 (+)
LOC110524118 NA coding upstream 507195 57200756 ~ 57264453 (+)
diras1a LOC106613605 coding upstream 637987 57116340 ~ 57133661 (+)
LOC118964626 LOC106595063 coding downstream 67984 57841922 ~ 57851518 (+)
LOC110524134 NA coding downstream 100867 57874805 ~ 57906660 (+)
sid1 NA coding downstream 128164 57902102 ~ 57903229 (+)
LOC110524136 LOC100136537 coding downstream 254823 58028761 ~ 58030894 (+)
LOC110522977 NA coding downstream 310783 58084721 ~ 58086269 (+)
G419357 NA non-coding upstream 37118 57734199 ~ 57734530 (+)
G419345 NA non-coding upstream 59022 57712414 ~ 57712626 (+)
G419338 NA non-coding upstream 71609 57699765 ~ 57700039 (+)
G419326 NA non-coding upstream 83578 57687831 ~ 57688070 (+)
G419307 NA non-coding upstream 111345 57660091 ~ 57660303 (+)
G419448 NA non-coding downstream 89860 57863798 ~ 57864930 (+)
G419449 NA non-coding downstream 91268 57865206 ~ 57884145 (+)
G419459 NA non-coding downstream 123458 57897396 ~ 57900379 (+)
G419901 NA non-coding downstream 211758 57985696 ~ 57985937 (+)
G419927 NA non-coding downstream 259497 58033435 ~ 58035576 (+)
LOC100135807 LOC106613594 other upstream 813483 56943838 ~ 56958165 (+)
G418251 rtca other upstream 846472 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1041827 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 1143031 56617890 ~ 56628617 (+)
G419452 NA other downstream 110442 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 639185 58411240 ~ 58418268 (+)
G420634 NA other downstream 1168790 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2920319 60694220 ~ 60695905 (+)
G423922 NA other downstream 3947599 61721537 ~ 61722024 (+)

Expression


Co-expression Network