G420194


Basic Information

Item Value
gene id G420194
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58028971 ~ 58030854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476196
CATATGTCCCACAGAAAACACCAAGCAAACAGTTTACTTCAGCTTCTTCTTGGGGCGCAGGTTGCTGGTGTGTCCACACTTCTTCTTGCGGCAGTTGACAGCACGAGGATGGAGGCGAGCGTAGCACTTGCGGCAGATCATTTTGTCGCAGTTGTACTTCTGGGCCAGCTGTCTCAGAGATGGCTCAATGATGCCTCCACGCAGACGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAAGGTACGACCATCTTCAAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATCTTGGCAGGCTGTTGGGAGAAAAATTGGTGCGAGTTGGTGGCAAGTTAACAAGCTTCTAAAAGAGAAATCCGTTAACTAGCAGTCTGCTACTCCCTGGCACCAAGAATGGAAATCCACAAACAATGCTATGGGAGTCCACAACTCAGTCATCAACGAGTATTAATGTTTTTGGAGGACAATAGTGAACACGCTAGCTATCCCATCGGCAATAAGAATGAGCAGCTGACTTAATAGTTAGCCATCAACTGCGGTCCAGCCAGTGCTAATAGTAAGGCCTCTGCCACATGCGGGAGCTCGTATTTCAATACTCATATTTACACATCTAACATGTGATAACCAAACGGCTACTGAGACACGTATATGGTAGCGAACGGACACTGTTGTATTTCTATAACGTTATAAATGCGTATTCTAGTCAATTTCACCAAAATTGGTATGAACTATAATGTGAACCCACCCGGCCGCTAGCTGAGCC
>TU476197
CTATCTTaggtaaaacagtaattctgcatgtatgaactacactgACACATCCAGCCTGAAGCAGGTTTTAAATAAATTATAGCCCCAAAGTGTGTCTTTAAAAGCACCTGTACCTTTTCGCATAGGGCTAACTCATAACTTTGAGCAGCATTACATGCTCTCATTAAATCATTATCTTACCTTTCTGGATGTTGTAGTCTGACAAGGTACGACCATCTTCAAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCTGAGAATAAAAATATAATTGATATGACCCACTAATGAAATCACTCATGCACAGTGCTAGTATCAAAGTGTAAAATCCACCTCCCAGCCATTCAGTATGACAAATGAGCTACAATGAAACGTAAAATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATCTTGGCAGGCCGGCCGCTAGCTGAGCC
>TU476198
CATATGTCCCACAGAAAACACCAAGCAAACAGTTTACTTCAGCTTCTTCTTGGGGCGCAGGTTGCTGGTGTGTCCACACTTCTTCTTGCGGCAGTTGACAGCACGAGGATGGAGGCGAGCGTAGCACTTGCGGCAGATCATTTTGTCGCAGTTGTACTTCTGGGCCAGCTGTCTCAGAGATGGCTCAATGATGCCTCCACGCAGACGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAAGGTACGACCATCTTCAAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCTGAGACTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATGGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATCTTGGCAGGCCGGCCGCTAGCTGAGCC

Function

NR:

description
ubiquitin-60S ribosomal protein L40

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU476196 False 896 lncRNA 0.47 4 58028971 58030854
TU476197 False 526 lncRNA 0.42 2 58028971 58029945
TU476198 True 453 lncRNA 0.52 5 58028971 58030854

Neighbor

gene id symbol gene type direction distance location
LOC110522874 NA coding downstream 14311 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 30531 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 147257 57876328 ~ 57881714 (-)
LOC110524131 LOC106613618 coding downstream 154107 57866562 ~ 57874864 (-)
wdr18 LOC106613619 coding downstream 166512 57771636 ~ 57862459 (-)
homer3b LOC106613626 coding upstream 2818 58033672 ~ 58081875 (-)
LOC110524138 LOC106613627 coding upstream 61457 58090616 ~ 58109445 (-)
pgpi pgpi coding upstream 84944 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 133064 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 346704 58377558 ~ 58380045 (-)
G420184 NA non-coding downstream 6168 58022286 ~ 58022803 (-)
G419900 NA non-coding downstream 43419 57985224 ~ 57985552 (-)
G419834 NA non-coding downstream 95555 57900287 ~ 57933416 (-)
G419815 NA non-coding downstream 177034 57841853 ~ 57851937 (-)
G419736 NA non-coding downstream 303086 57725593 ~ 57725885 (-)
G420179 NA non-coding upstream 1267 58032121 ~ 58083723 (-)
G420233 NA non-coding upstream 56089 58086943 ~ 58087264 (-)
G420192 NA non-coding upstream 58888 58089742 ~ 58090474 (-)
G420236 NA non-coding upstream 78803 58109657 ~ 58111574 (-)
G419714 NA other downstream 323035 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 402797 57612040 ~ 57627128 (-)
G419603 NA other downstream 417404 57611059 ~ 57611567 (-)
G418830 NA other downstream 1194376 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1317587 56703896 ~ 56711499 (-)
G420193 NA other upstream 81533 58112387 ~ 58114060 (-)
G420421 NA other upstream 382274 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 995249 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1102016 59131152 ~ 59138429 (-)
G422347 NA other upstream 2069911 60100765 ~ 60101056 (-)

Expression


Co-expression Network