G420179


Basic Information

Item Value
gene id G420179
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58032121 ~ 58083723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476167
ttattaactgacttgcctagttaaataaaggtttttaaaaaacgTGTTTCTCAAAACCGGAATATACGATTTTTCGGGTTATTGTATGTGTTTTATATATGCGTCAACTCAAAAACAAAATACTTGAGTTTCCCAAAAAATTATGGGATATTGGTATGCATGTAAACGTGGTCTCTGCTGTCCCTACCTAAAAGTGTGACTGTCATCCAAGAATTTATCAGGAAGTGCAACCTGCTCTGTGTACTTCTTGATGCCTAGAAGTacacagaggagggggggggcgGCATGGTCGTTTTCCTAGCCCATCTCCAACCTTCTGGAGAAGACTTGACAGAAAATGTGATCATCCCACTGGAGTGATGATACAAAATGCAGTACCAAAGATGCACTTTTCTTACCCACATAACTGGATGAAGCACAACTGACTGGAAAAATATATATTGGAATGCCTGTGGAATTATTCTGTAATTAAAATGTGTAGGGTCTGTAGTGTTCTCTTACTCTTAATACACTTGACAACCACTAATACTTCAAATACCTCAGCGACCTACTTTGAACTCCAAGTGTCTGAGCACTTTCAAATACAATGATTATCCTTGTAATCACATTGGACTGGTGGTTTATATTTGTTGCATTATTTAACAAGGATACATTTTTCCTGTATTAAAACAGGGCCTTAATCACACTTGCCTGATTTGACTTTACTTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476167 True 711 lncRNA 0.38 2 58032121 58083723

Neighbor

gene id symbol gene type direction distance location
LOC110522874 NA coding downstream 17461 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 33681 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 150407 57876328 ~ 57881714 (-)
LOC110524131 LOC106613618 coding downstream 157257 57866562 ~ 57874864 (-)
wdr18 LOC106613619 coding downstream 169662 57771636 ~ 57862459 (-)
LOC110524138 LOC106613627 coding upstream 8588 58090616 ~ 58109445 (-)
pgpi pgpi coding upstream 32075 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 80195 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 293835 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 296057 58379780 ~ 58409320 (-)
G420194 NA non-coding downstream 1267 58028971 ~ 58030854 (-)
G420184 NA non-coding downstream 9318 58022286 ~ 58022803 (-)
G419900 NA non-coding downstream 46569 57985224 ~ 57985552 (-)
G419834 NA non-coding downstream 98705 57900287 ~ 57933416 (-)
G419815 NA non-coding downstream 180184 57841853 ~ 57851937 (-)
G420233 NA non-coding upstream 3220 58086943 ~ 58087264 (-)
G420192 NA non-coding upstream 6019 58089742 ~ 58090474 (-)
G420236 NA non-coding upstream 25934 58109657 ~ 58111574 (-)
G420243 NA non-coding upstream 51633 58135356 ~ 58135856 (-)
G419714 NA other downstream 326185 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 405947 57612040 ~ 57627128 (-)
G419603 NA other downstream 420554 57611059 ~ 57611567 (-)
G418830 NA other downstream 1197526 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1320737 56703896 ~ 56711499 (-)
G420193 NA other upstream 28664 58112387 ~ 58114060 (-)
G420421 NA other upstream 329405 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 942380 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1049147 59131152 ~ 59138429 (-)
G422347 NA other upstream 2017042 60100765 ~ 60101056 (-)

Expression


Co-expression Network