G419927


Basic Information

Item Value
gene id G419927
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58033435 ~ 58035576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475878
gcagcactccaccaatcagacttTTATGatatagtggccagacggaagccactgctcagtaaaaaggtacatgacagcccacttgaaatttgccaaaaggctcctaaaggactcccaacctgatagagcttgagaggatctgcagagcagaatgggagaaacttcccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagactcaatgctgtagtCAATACAAAAGgcgcttcagcaaagtactgagtacagggtctgaatactttaaaaTGTGATAgccgtttttttatttgtaataaatttgcaccCCAAAaattgtcattatgaggtattgtgtgtagaatgatgaggggaTAAAAAATAATTTGATCAATTTGAgaataatataacaaaatgtgggaaaagtcaaggggtctgaatactttccgaatgcactgtacatgcagcttctctttcGTAATAACTTGATGCCCTAGAAGACAAAATCAAGTAATGCTTACCAGATGAATGCATTAGTAATCTAATTACCAGTAAAGTTGTCTGTTTCGTTTTGGGACCTGGGAGAAAACACAATAACTCCAAATCAGTAGAAGAATTGTTcctgtggaaaatgtccaaatttcATAAATTTGACTAGTTAAGGTTAAATGAAAAGCTGAGAAAACCATGGAAAACACTTCTGATAAGACTTCAGTTCATCTCAGGTGCATATTTTGTGTGGTTGAACTACTGTCTGCTTGCAAAACAGTGTCAAATATAACATGTTACACACGTATTCACATTTTCTCAATAGATgctgaaagaaaaAACATTTGTTGTACCATTTTACAGTAAGAAATGCATTATTCTGCAGTAGTTAATGTTATATTACTCtacatgtgagaggttataggccGACAGTCAGTGTCCACATTTCAGTTACttttccatttaacccatatgAACTTAAATTAGGAATATACTATTTAGTCACATGGATACTTGTGAGCGGGATATCAaaggtgcatgtaaacagctTATCCCGAATAAGACCTTAAGCAGGATATGAGCTACAAACCGAAATGTATGTAAATGTGGTCATTGTTCAACAGAATTGCAGTTTGTCTACATGAACAAGGTGAGATTACATTACCTACAGAGTGCTTGTCAAAAAACTGTATTGCTAATTCAACACTGATTTAACCTTATTTGTACCTAAATAATACCATGAAAAAATGCCTCAATGCCTAGGTCAGAAGAGAATCTCGATGGTGTGCATCAGTGAAAGTAGAGATACCAGGTTAGCTTTTGCATTGAATCAAGTACAGTACATCTTTACTAATAACACTACTTGTGCTTTTAAATCTATTTGTAAAAGGTTGCACATTGGGTAATGCGCATAACTCACATTACTGTACTTGGCAAGGTTCTTCACTGAGCTCATTAAGTTTTGTCATTGAGTACCCTTGGTGATAAACCCTCCGCAGCAACATTTCTGTAGGATGATCAAATAATTATGTTATCTGTTAATGTAATACAATACATAAAACAACAGAAGTAAATTATTATTAATTGTTAATACTGACAAACGGAAACAATAATTTGGCAACTACATTTTTAAGTACAAGCCCAGATTCAATTCAACTACTTTTAAAAGTTCAAGATAACTTCTATAATAGCAGGTTGACTGAATCATAACCCAACAAAACATTGAGATAAATGGTGTAAACGTCGACTCAACAATTCTCACAGCGACGAAGAAAAAATATTAGATTGTTATTTTCAAGGTGGTGGGTAGGAGCAATGTACCGCTGCAATGGGTGGATCCACGGTTCTACTCTTAACCTCTGTAATAATGTGCTTAAGCAAACATTGTTCCAAAAGAGCTAGCTTCCTTTCCGTCCTTGTCCACCGCCCTCTACCATCCTGTCATCGCGTTGCTCTATTTGTCGATGAGCTTGGCCAAGCTCTGTCGTAGGTCATTCAGGTCGTAGATCTTGACATCCAGGACGTCGATGACCCGCTGAACCTCACTCTCCGCCCTATCCCGCTCCTCCAGAGAGGAAGCCAGAGTCTGCTCGGCTTTCTCCACCCGTTGCTCAAGTTCTGCATTCCGTGTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475878 True 2108 lncRNA 0.38 2 58033435 58035576

Neighbor

gene id symbol gene type direction distance location
LOC110524136 LOC100136537 coding upstream 2541 58028761 ~ 58030894 (+)
LOC110524134 NA coding upstream 126775 57874805 ~ 57906660 (+)
sid1 NA coding upstream 130206 57902102 ~ 57903229 (+)
LOC118964626 LOC106595063 coding upstream 181917 57841922 ~ 57851518 (+)
tmem259 LOC106613615 coding upstream 392324 57627305 ~ 57641111 (+)
LOC110522977 NA coding downstream 49145 58084721 ~ 58086269 (+)
LOC110524139 lsm4 coding downstream 84489 58120065 ~ 58124398 (+)
LOC110524140 LOC106613630 coding downstream 122945 58158521 ~ 58160134 (+)
LOC110524142 NA coding downstream 163811 58199387 ~ 58205370 (+)
LOC110524143 LOC106573897 coding downstream 276756 58312332 ~ 58370090 (+)
G419901 NA non-coding upstream 47498 57985696 ~ 57985937 (+)
G419459 NA non-coding upstream 133056 57897396 ~ 57900379 (+)
G419449 NA non-coding upstream 149290 57865206 ~ 57884145 (+)
G419448 NA non-coding upstream 168505 57863798 ~ 57864930 (+)
G419380 NA non-coding upstream 259497 57771648 ~ 57773938 (+)
G419971 NA non-coding downstream 50983 58086559 ~ 58086794 (+)
G419980 NA non-coding downstream 52090 58087666 ~ 58087897 (+)
G419979 NA non-coding downstream 54120 58089696 ~ 58089817 (+)
G419976 NA non-coding downstream 54417 58089993 ~ 58090475 (+)
G419986 LOC106613627 non-coding downstream 69539 58105115 ~ 58106945 (+)
G419452 NA other upstream 133787 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 666098 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1075270 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1108259 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1303614 56726185 ~ 56729821 (+)
G420117 LOC100846954 other downstream 377547 58411240 ~ 58418268 (+)
G420634 NA other downstream 907152 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2658681 60694220 ~ 60695905 (+)
G423922 NA other downstream 3685961 61721537 ~ 61722024 (+)
G424079 NA other downstream 4069947 62105523 ~ 62105872 (+)

Expression


Co-expression Network