G420192


Basic Information

Item Value
gene id G420192
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58089742 ~ 58090474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476192
GGGACTGTTTTATATTGAGGAATCCTTTTCTATTTGAGGAGTCCTCTATCAGTTTTTAGGAATGTCATTTGGATGCTTCGAGCACCAAATTGAGAATGTATTCATTTTAGCTCACCGCCTGCATTGTCCTCTGCTGtccattcatttttatttttctttGTCGTCACCTGACTTTGAATATGTCAATCCAAAACACATTGTATGACAATCTTGCTGTCAAATAGCTAGTCGTGGTTGAAGAAATGCTTACAAATGGTCTTTTTTGATCAACATTATGCATTTTTCCATGTTGATTATGTTACTTGTATTTCACATCAAGAATTCCAGCAGGGAATATAGCATTGCTCCTTATACTTTTTACTAGGATGGTGACATTATACTTATGTTGAAATGAAATACAGCAATCCTGCTATCAAAGTTTGTCATCTGTTACATGGCCAGCACGGCTAACtagaaatgtattaaaagtaTATTACCAAACTATACTGCAGGAATCAATGGATAAGAACAAACATTTTTTTACGGTAATGGTAAAATGGTAATATGGTAATGTATGCCTTCCTTCTTCCCAGCTTTTGGATTCTCACTATGGAAAAACTGCACTGGATTTGCAGGAATTAGTAGTTTAGTTGCAGTGAAGATTAATCTAGACATTTTGCCTGATGATTCCTCTCTTGTGAAACAGAAGCAAAGGTTGCTTATATGTCAAAGGGTTTGAGGATTGAGAAAGTGA
>TU476191
GGGACTGTTTTATATTGAGGAATCCTTTTCTATTTGAGGAGTCCTCTATCAGTTTTTAGGAATGTCATTTGGATGCTTCGAGCACCAAATTGAGAATGTATTCATTTTAGCTCACCGCCTGCATTGTCCTCTGCTGtccattcatttttatttttctttGTCGTCACCTGACTTTGAATATGTCAATCCAAAACACATTGTATGACAATCTTGCTGTCAAATAGCTAGTCGTGGTTGAAGAAATGCTTACAAATGGTCTTTTTTGATCAACATTATGCATTTTTCCATGTTGATTATGTTACTTGTATTTCACATCAAGAATTCCAGCAGGGAATATAGCATTGCTCCTTATACTTTTTACTAGGATGGTGACATTATACTTATGTTGAAATGAAATACAGCAATCCTGCTATCAAAGTTTGTCATCTGTTACATGGCCAGCACGGCTAACtagaaatgtattaaaagtaTATTACCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476192 False 733 lncRNA 0.35 1 58089742 58090474
TU476191 True 481 lncRNA 0.35 1 58089994 58090474

Neighbor

gene id symbol gene type direction distance location
homer3b LOC106613626 coding downstream 7867 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 75082 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 91302 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 208028 57876328 ~ 57881714 (-)
LOC110524131 LOC106613618 coding downstream 214878 57866562 ~ 57874864 (-)
LOC110524138 LOC106613627 coding upstream 1837 58090616 ~ 58109445 (-)
pgpi pgpi coding upstream 25324 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 73444 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 287084 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 289306 58379780 ~ 58409320 (-)
G420233 NA non-coding downstream 2478 58086943 ~ 58087264 (-)
G420179 NA non-coding downstream 6019 58032121 ~ 58083723 (-)
G420194 NA non-coding downstream 58888 58028971 ~ 58030854 (-)
G420184 NA non-coding downstream 66939 58022286 ~ 58022803 (-)
G419900 NA non-coding downstream 104190 57985224 ~ 57985552 (-)
G420236 NA non-coding upstream 19183 58109657 ~ 58111574 (-)
G420243 NA non-coding upstream 44882 58135356 ~ 58135856 (-)
G420248 NA non-coding upstream 54014 58144488 ~ 58145156 (-)
G420254 NA non-coding upstream 64106 58154580 ~ 58154803 (-)
G419714 NA other downstream 383806 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 463568 57612040 ~ 57627128 (-)
G419603 NA other downstream 478175 57611059 ~ 57611567 (-)
G418830 NA other downstream 1255147 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1378358 56703896 ~ 56711499 (-)
G420193 NA other upstream 21913 58112387 ~ 58114060 (-)
G420421 NA other upstream 322654 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 935629 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1042396 59131152 ~ 59138429 (-)
G422347 NA other upstream 2010291 60100765 ~ 60101056 (-)

Expression


Co-expression Network