G420236


Basic Information

Item Value
gene id G420236
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58109657 ~ 58111574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476243
caATTTTAGATAGTTTCTCTTACTTGCAAAAGCCAAATGCTGCTCGTTTACATGGATTTCTTATTGTTTCTTGAGTATTTTTATAAGAAGTTGTAGTTGTGCCTTTTACTACGGTTATTTATATCAGGGAACGGTTTGGTTCTATCTCATATTTTCAAGTCTGTGGGCCCAACTTTGATTGATAGCTGTATGGCGATGTTTGAAGTTCAATGAACTTCATCAGATCAGTATGCTTATCTCAGCCGAGGATTTCATTTGATGAAGTGGGCAGGTAGGCAGCCAGGTGAGAACTGGACCCAGTTCTTGCATTTCTGTAGCACTTTCTTTTTTACTTTATTGAATGAATTGTTTTGGATGTTTCAGCTTTATGAACGTCATTGAGCTAGTTTAGTTTTGTTCTTGTATTTTTGTCATAACACAGTATTTGTTTTCAGTTGTCTCCCATTACGGCTTCTTCCCGTGTTGTATCTATATTTTAAAAGACATGTCATACCTCTCGTGGTACAACCACATAATAACATACAGTACCTGATCCAGATTAATTGTATCTTCTTCCCAGAACAACTGTCATAAGCAATTTCGTTGCCTAAAATATGTTTTGTGTTTACTGGGTATTTGAGTGTTCATGGACTGTATCCATGGAGATTTGTCTTTGTGTTGTTTATGTGTTCCTTCACACTGTCACATACTGGTTATTACATATGTGATTAAATTGTGACTATACTCACAGATGTGAAAGCCTATGTCCCCAAATGCTTGTTGAGGTGACCAATTTCCTTACTCTACTCTTCTGACCTGTGTAATAATGGAAAGGGCTGTAGAATATTCACTAGGTTACTATTTAGAAATAAACTTCCGCCATACATCGATCCCAGTATGCCTAACATCTATACCAACCTATAAATGCTCCTCTGTCTCAATGTGTAGGCCTATTGTTCTTAGATGTGTATCATATTTTATGACATCTAGATGTATATCAAATTCCTCTGTATTTTCCCGTATTTCTATTTAGTGGTTGGTTttgtaaacaaaaataaacattgaaaAAGATGACCC
>TU476247
tgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaactacagttttatatctttgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagattcatACTGTAAATGTGTACATCCACTGTATATCAATAATATACCCACTGTACATTTGTATATCTGCTCCTTCTCTATGTTCACTTTACCTagttgtatataatgtgtgtaaactTCGTTGTCTGTATTCGGTCTCTAAATGTTGTCTATCACAAGCAGCCGGCACCATATCACCAAGTACAACTCTGAGTATTTGTAAATGTACATAgtgaataaaggtgattctgatggTGCTTTCATAAGGTGTTTTGCTGGATTTATATGTTGTATAGAAATGTTTAATGTACCTGAAAAATGTTCTGTAGAGCagactttttttaaatttaaagtGAACTGCATATTGTGTTTTCATATCCCCCCCAACGTTATCTAaacttttgtttgttgtttttttttggggggggggggggggggggaacagcaATTTTAGATAGTTTCTCTTACTTGCAAAAGCCAAATGCTGCTCGTTTACATGGATTTCTTATTGTTTCTTGAGTATTTTTATAAGAAGTTGTAGTTGTGCCTTTTACTACGGTTATTTATATCAGGGAACGGTTTGGTTCTATCTCATATTTTCAAGTCTGTGGGCCCAACTTTGATTGATAGCTGTATGGCGATGTTTGAAGTTCAATGAACTTCATCAGATCAGTATGCTTATCTCAGCCGAGGATTTCATTTGATGAAGTGGGCAGGTAGGCAGCCAGGTGAGAACTGGACCCAGTTCTTGCATTTCTGTAGCACTTTCTTTTTTACTTTATTGAATGAATTGTTTTGGATGTTTCAGCTTTATGAACGTCATTGAGCTAGTTTAGTTTTGTTCTTGTATTTTTGTCATAACACAGTATTTGTTTTCAGTTGTCTCCCATTACGGCTTCTTCCCGTGTTGTATCTATATTTTAAAAGACATGTCATACCTCTCGTGGTACAACCACATAATAACATACAGTACCTGATCCAGATTAATTGTATCTTCTTCCCAGAACAACTGTCATAAGCAATTTCGTTGCCTAAAATATGTTTTGTGTTTACTGGGTATTTGAGTGTTCATGGACTGTATCCATGGAGATTTGTCTTTGTGTTGTTTATGTGTTCCTTCACACTGTCACATACTGGTTATTACATATGTGATTAAATTGTGACTATACTCACAGATGTGAAAGCCTATGTCCCCAAATGCTTGTTGAGGTGACCAATTTCCTTACTCTACTCTTCTGACCTGTGTAATAATGGAAAGGGCTGTAGAATATTCACTAGGTTACTATTTAGAAATAAACTTCCGCCATACATCGATCCCAGTATGCCTAACATCTATACCAACCTATAAATGCTCCTCTGTCTCAATGTGTAGGCCTATTGTTCTTAGATGTGTATCATATTTTATGACATCTAGATGTATATCAAATTCCTCTGTATTTTCCCGTATTTCTATTTAGTGGTTGGTTttgtaaacaaaaataaacattgaaaAAGATGACCC
>TU476250
tgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaactacagttttatatctttgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagattcatACTGTAAATGTGTACATCCACTGTATATCAATAATATACCCACTGTACATTTGTATATCTGCTCCTTCTCTATGTTCACTTTACCTagttgtatataatgtgtgtaaactTCGTTGTCTGTATTCGGTCTCTAAATGTTGTCTATCACAAGCAGCCGGCACCATATCACCAAGTACAACTCTGAGTATTTGTAAATGTACATAgtgaataaaggtgattctgatggTGCTTTCATAAGGTGTTTTGCTGGATTTATATGTTGTATAGAAATGTTTAATGTACCTGAAAAATGTTCTGTAGAGCagactttttttaaatttaaagtGAACTGCATATTGTGTTTTCATATCCCCCCCAACGTTATCTAaacttttgtttgttgtttttttttggggggggggggggggggggaacagcaATTTTAGATAGTTTCTCTTACTTGCAAAAGCCAAATGCTGCTCGTTTACATGGATTTCTTATTGTTTCTTGAGTATTTTTATAAGAAGTTGTAGTTGTGCCTTTTACTACGGTTATTTATATCAGGGAACGGTTTGGTTCTATCTCATATTTTCAAGTCTGTGGGCCCAACTTTGATTGATAGCTGTATGGCGATGTTTGAAGTTCAATGAACTTCATCAGATCAGTATGCTTATCTCAGCCGAGGATTTCATTTGATGAAGTGGGCAGGTAGGCAGCCAGGTGAGAACTGGACCCAGTTCTTGCATTTCTGTAGCACTTTCTTTTTTACTTTATTGAATGAATTGTTTTGGATGTTTCAGCTTTATGAACGTCATTGAGCTAGTTTAGTTTTGTTCTTGTATTTTTGTCATAACACAGTATTTGTTTTCAGTTGTCTCCCATTACGGCTTCTTCCCGTGTTGTATCTATATTTTAAAAGACATGTCATACCTCTCGTGGTACAACCACATAATAACATACAGTACCTGATCCAGATTAATTGTATCTTCTTCCCAGAACAACTGTCATAAGCAATTTCGTTGCCTAAAATATGTTTTGTGTTTACTGGGTATTTGAGTGTTCATGGACTGTATCCATGGAGATTTGTCTTTGTGTTGTTTATGTGTTCCTTCACACTGTCACATACTGGTTATTACATATGTGATTAAATTGTGACTATACTCACAGATGTGAAAGCCTATGTCCCCAAATGCTTGTTGAGGTGACCAATTTCCTTACTCTACTCTTCTGACCTGTGTAATAATGGAAAGGGCTGTAGAATATTCACTAGGTTACTATTTAGAAATAAACTTCCGCCATACATCGATCCCAGTATGCCTAACATCTATACCAACCTATAAATGCTCCTCTGTCTCAATGTGTAGGCCTATTGTTCTTAGATGTGTATCATATTTTATGACATCTAGATGTATATCAAATTCCTCTGTATTTTCCC
>TU476245
tgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaactacagttttatatctttgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagattcatACTGTAAATGTGTACATCCACTGTATATCAATAATATACCCACTGTACATTTGTATATCTGCTCCTTCTCTATGTTCACTTTACCTagttgtatataatgtgtgtaaactTCGTTGTCTGTATTCGGTCTCTAAATGTTGTCTATCACAAGCAGCCGGCACCATATCACCAAGTACAACTCTGAGTATTTGTAAATGTACATAgtgaataaaggtgattctgatggTGCTTTCATAAGGTGTTTTGCTGGATTTATATGTTGTATAGAAATGTTTAATGTACCTGAAAAATGTTCTGTAGAGCagactttttttaaatttaaagtGAACTGCATATTGTGTTTTCAT
>TU476249
cttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctttgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatatggcgacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaactacagttttatatctttgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagattcatACTGTAAATGTGTACATCCACTGTATATCAATAATATACCCACTGTACATTTGTATATCTGCTCCTTCTCTATGTTCACTTTACCTagttgtatataatgtgtgtaaactTCGTTGTCTGTATTCGGTCTCTAAATGTTGTCTATCACAAGCAGCCGGCACCATATCACCAAGTACAACTCTGAGTATTTGTAAATGTACATAgtgaataaaggtgattctgatggTGCTTTCATAAGGTGTTTTGCTGGATTTATATGTTGTATAGAAATGTTTAATGTACCTGAAAAATGTTCTGTAGAGCagactttttttaaatttaaagtGAACTGCATATTGTGTTTTCAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476243 False 1056 lncRNA 0.36 1 58109657 58110712
TU476247 False 1636 lncRNA 0.36 1 58109657 58111292
TU476250 False 1578 lncRNA 0.37 1 58109715 58111292
TU476245 False 511 lncRNA 0.35 1 58110782 58111292
TU476249 True 793 lncRNA 0.37 1 58110782 58111574

Neighbor

gene id symbol gene type direction distance location
LOC110524138 LOC106613627 coding downstream 212 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 27782 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 94997 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 111217 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 227943 57876328 ~ 57881714 (-)
pgpi pgpi coding upstream 4224 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 52344 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 265984 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 268206 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 305298 58416872 ~ 58475233 (-)
G420192 NA non-coding downstream 19183 58089742 ~ 58090474 (-)
G420233 NA non-coding downstream 22393 58086943 ~ 58087264 (-)
G420179 NA non-coding downstream 25934 58032121 ~ 58083723 (-)
G420194 NA non-coding downstream 78803 58028971 ~ 58030854 (-)
G420243 NA non-coding upstream 23782 58135356 ~ 58135856 (-)
G420248 NA non-coding upstream 32914 58144488 ~ 58145156 (-)
G420254 NA non-coding upstream 43006 58154580 ~ 58154803 (-)
G420313 NA non-coding upstream 140064 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 141628 58253202 ~ 58253429 (-)
G419714 NA other downstream 403721 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 483483 57612040 ~ 57627128 (-)
G419603 NA other downstream 498090 57611059 ~ 57611567 (-)
G418830 NA other downstream 1275062 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1398273 56703896 ~ 56711499 (-)
G420193 NA other upstream 813 58112387 ~ 58114060 (-)
G420421 NA other upstream 301554 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 914529 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1021296 59131152 ~ 59138429 (-)
G422347 NA other upstream 1989191 60100765 ~ 60101056 (-)

Expression


Co-expression Network