G420193


Basic Information

Item Value
gene id G420193
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58112387 ~ 58114060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476193
aatcaaatagctaaatgatccatggtatgaccatcttaaaacaattccacgtGTTATGTCAGCTTAGTAACCTTCCCCTCAAATGGCGTAGTTATTTAAGGTTTAAAGCACTGCACAGACCAGCTCTCCCGTTTTCACTGACCATATTCAACCAGTCTTTAGAGCAATGCATTGTTCCTGCCTGTTTCAAATCTTCCATCATTGTTACAGTCCCAAAAAAACCTAAATGTGTCCTGCCTGAACTTTTACAGACCTGCAGTGCTCACCTCGGTAATCATGAAAACCTTTCAGCGCCTGGTACTTTCCAATCTCAAAACCATCACTGACGCCTCCCTCAACCCACTGCAGTTTGCCTACAGAGCTGACAGGTCTGTGGACGACACTGTCGAAATGGGCCAACACTACATCCTCAAACACATCGATAACCCATAGACATATACAAGGACATAGTTTGTGGACTTTAGCTCTGCTTTCATTACATTATCTCAGAACTGCTACAAGACAAACTGTCCTAGCTGAACGTGTCCAGCTCCATCTATCAGTGGACTACTGACTTCCTAACCAACAGGACGCAACACGTGAAGCTGGGAAAACACCTCTCGGACTCTTTATCCCTCAGCACCAGAGTGCCGCAAGGATGCGTGCTCTCACCTGTACTCTACTCACTTTGCACCTCTAACAACGCATCTGTCAAACTactcaagtttgcagatgacgcAACTCTGGTCGATCTCATCACCGACGGCGATGAGTACATGTACCGTGGAGAGGTCAACCAACTAGTGGCCTGGTACAGTCAAAATAACCTGGAACTCAACACAGACAAAACCGTGGAAATGGTGGTTGACTTAAGAAAAcgccccccaccatctctccccctcgAGATTGTTGGCTCAGCTGTTAGCATGGCTGAATCATTCAAATTCCTGGGGACCATCATCTCCCACAACCTCAAATTGGAGGACAACATCACAGAGGTCACCAAGGCGGCACACCAGTGGATGTACTACTTGCAGCAGCAAAACACAATCTCCCACCCAAACATTATCCGGTTTTAAGCATCAATCGTTGAGTCCATCCTTCATCTCCTCCATCACTGTCTGGTTTGGGTCTGCCCACTGCAAGGGCAAACTGCAACACATACCCAAAACGTCTTGCCACCTGAATAGTTTCTTCCCCCaggctgtggccctcagtgaggttggatggagagcatttgtgaaca

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476193 True 1225 TUCP 0.47 2 58112387 58114060

Neighbor

gene id symbol gene type direction distance location
LOC110524138 LOC106613627 coding downstream 2942 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 30512 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 97727 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 113947 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 230673 57876328 ~ 57881714 (-)
pgpi pgpi coding upstream 1738 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 49858 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 263498 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 265720 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 302812 58416872 ~ 58475233 (-)
G420236 NA non-coding downstream 813 58109657 ~ 58111574 (-)
G420192 NA non-coding downstream 21913 58089742 ~ 58090474 (-)
G420233 NA non-coding downstream 25123 58086943 ~ 58087264 (-)
G420179 NA non-coding downstream 28664 58032121 ~ 58083723 (-)
G420243 NA non-coding upstream 21296 58135356 ~ 58135856 (-)
G420248 NA non-coding upstream 30428 58144488 ~ 58145156 (-)
G420254 NA non-coding upstream 40520 58154580 ~ 58154803 (-)
G420313 NA non-coding upstream 137578 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 139142 58253202 ~ 58253429 (-)
G419714 NA other downstream 406451 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 486213 57612040 ~ 57627128 (-)
G419603 NA other downstream 500820 57611059 ~ 57611567 (-)
G418830 NA other downstream 1277792 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1401003 56703896 ~ 56711499 (-)
G420421 NA other upstream 299068 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 912043 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1018810 59131152 ~ 59138429 (-)
G422347 NA other upstream 1986705 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2944934 61058949 ~ 61081864 (-)

Expression


Co-expression Network