G420243


Basic Information

Item Value
gene id G420243
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58135356 ~ 58135856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476257
ATGAAGTACCGCACTGTGATTATTAAtttaaatggtcaaaaataaacaaagagCAATTATTTTCAAAGAGCAAGTTCTCAAACAATTTTTTTgccaggactgtctgggagtggtctgagtggggaggggaaaactgaaatgtagctgttattggcagagaggttaggAACTCTTTTTTATTGGTATATTAACTAAATTTACAGCCTGGTGATGTCCCCAGGCAGGTCAATACTCCattccaccaaaacaggctgaaatttcagacaGCCTTTTCAAACATCACTTACACTAAAAGACCATTATCATAAttgtcacagtattattccagaGGTGGCAGAATGAAGTGCTCgagttggggtgtagggtttgagcatagcctgaaggtagggaacTGCCCCTACAACCCAACCCTACAATCCAaccactccgttctgccacctctggtcacTTGCTCCTCCCACCCCTATAAGAGGGCAGCTCACACtaagcccagtccaagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476257 True 501 lncRNA 0.44 1 58135356 58135856

Neighbor

gene id symbol gene type direction distance location
pgpi pgpi coding downstream 15317 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 25911 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 53481 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 120696 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 136916 57989745 ~ 57998440 (-)
LOC110524141 LOC106613631 coding upstream 28062 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 241702 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 243924 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 281016 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 410528 58546384 ~ 58567683 (-)
G420236 NA non-coding downstream 23782 58109657 ~ 58111574 (-)
G420192 NA non-coding downstream 44882 58089742 ~ 58090474 (-)
G420233 NA non-coding downstream 48092 58086943 ~ 58087264 (-)
G420179 NA non-coding downstream 51633 58032121 ~ 58083723 (-)
G420248 NA non-coding upstream 8632 58144488 ~ 58145156 (-)
G420254 NA non-coding upstream 18724 58154580 ~ 58154803 (-)
G420313 NA non-coding upstream 115782 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 117346 58253202 ~ 58253429 (-)
G420315 NA non-coding upstream 117694 58253550 ~ 58253764 (-)
G420193 NA other downstream 21296 58112387 ~ 58114060 (-)
G419714 NA other downstream 429420 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 509182 57612040 ~ 57627128 (-)
G419603 NA other downstream 523789 57611059 ~ 57611567 (-)
G418830 NA other downstream 1300761 56834026 ~ 56834595 (-)
G420421 NA other upstream 277272 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 890247 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 997014 59131152 ~ 59138429 (-)
G422347 NA other upstream 1964909 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2923138 61058949 ~ 61081864 (-)

Expression


Co-expression Network