G420248



Basic Information


Item Value
gene id G420248
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58144488 ~ 58145156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU476262
gttaccggacttagtctgcgcgcagaccgaacaagcagccacgaagcgacgcgtgtcatgctcccgggtgggtcaccaaaaacgctggcgaatggaagcaagcgtaccccgaacgccagggtggccggctaacttggcagagtgagcccactgaagaacggccagacgagtaggaacgggaacgaaaagaaggttcctaggacaagcgcgcggcgacggagtttgagtgagtgcttgctttacctgcctctcaattccccagacagtcaacccgacaacacgcccctcagggagaatcccctcggggtcagtggaggctactgaagaactgaagagacgagataaagcatcaggcttggtgttcttagagcccggacgataagaaatcacgaactcgaaacgagcgaaaaacagcgcccagcgcgcctgacgcgcattaagtcgtttggcagaacggatgtactcaaggttcctatggtcagtccaaacgacaaaaggaacggtcgccccctccaaccactgtcgccattcgcctagggctaagcggatggcgagcagttcgcggttacccacatcatagttacgttccgacggcgacaggcgatgagaaaaatacgcgcaagggtggaccttgtcgtcagagagggagcgctgagaaagaatggctcc

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU476262 True 669 lncRNA 0.57 1 58144488 58145156

Neighbor


gene id symbol gene type direction distance location
pgpi pgpi coding downstream 24449 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 35043 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 62613 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 129828 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 146048 57989745 ~ 57998440 (-)
LOC110524141 LOC106613631 coding upstream 18762 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 232402 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 234624 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 271716 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 401228 58546384 ~ 58567683 (-)
G420243 NA non-coding downstream 8632 58135356 ~ 58135856 (-)
G420236 NA non-coding downstream 32914 58109657 ~ 58111574 (-)
G420192 NA non-coding downstream 54014 58089742 ~ 58090474 (-)
G420233 NA non-coding downstream 57224 58086943 ~ 58087264 (-)
G420254 NA non-coding upstream 9424 58154580 ~ 58154803 (-)
G420313 NA non-coding upstream 106482 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 108046 58253202 ~ 58253429 (-)
G420315 NA non-coding upstream 108394 58253550 ~ 58253764 (-)
G420316 NA non-coding upstream 109175 58254331 ~ 58254556 (-)
G420193 NA other downstream 30428 58112387 ~ 58114060 (-)
G419714 NA other downstream 438552 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 518314 57612040 ~ 57627128 (-)
G419603 NA other downstream 532921 57611059 ~ 57611567 (-)
G418830 NA other downstream 1309893 56834026 ~ 56834595 (-)
G420421 NA other upstream 267972 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 880947 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 987714 59131152 ~ 59138429 (-)
G422347 NA other upstream 1955609 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2913838 61058949 ~ 61081864 (-)

Expression



Co-expression Network