G420254



Basic Information


Item Value
gene id G420254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58154580 ~ 58154803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU476268
gtaaactctccttccagactcacattaagcatctccaatctaaaattaaatctagaattggcttcctatttcacaacaaagcatccttcactcatgctgctgaacataccctcgtaaagctgactatcctaccaatcctcgacttcggcaatgtcatttacaaaatagcctccaacactctactcagaaaattggatgtagtcgatccgttttgtcaccaaaac

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU476268 True 224 lncRNA 0.40 1 58154580 58154803

Neighbor


gene id symbol gene type direction distance location
pgpi pgpi coding downstream 34541 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 45135 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 72705 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 139920 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 156140 57989745 ~ 57998440 (-)
LOC110524141 LOC106613631 coding upstream 9115 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 222755 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 224977 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 262069 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 391581 58546384 ~ 58567683 (-)
G420248 NA non-coding downstream 9424 58144488 ~ 58145156 (-)
G420243 NA non-coding downstream 18724 58135356 ~ 58135856 (-)
G420236 NA non-coding downstream 43006 58109657 ~ 58111574 (-)
G420192 NA non-coding downstream 64106 58089742 ~ 58090474 (-)
G420313 NA non-coding upstream 96835 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 98399 58253202 ~ 58253429 (-)
G420315 NA non-coding upstream 98747 58253550 ~ 58253764 (-)
G420316 NA non-coding upstream 99528 58254331 ~ 58254556 (-)
G420320 NA non-coding upstream 104818 58259621 ~ 58259877 (-)
G420193 NA other downstream 40520 58112387 ~ 58114060 (-)
G419714 NA other downstream 448644 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 528406 57612040 ~ 57627128 (-)
G419603 NA other downstream 543013 57611059 ~ 57611567 (-)
G418830 NA other downstream 1319985 56834026 ~ 56834595 (-)
G420421 NA other upstream 258325 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 871300 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 978067 59131152 ~ 59138429 (-)
G422347 NA other upstream 1945962 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2904191 61058949 ~ 61081864 (-)

Expression



Co-expression Network