XLOC_023438 (apoob)


Basic Information

Item Value
gene id XLOC_023438
gene name apoob
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21978230 ~ 21989406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046360
ACGCATTGAGGCTTTTGTCCTCACAGACACGCCGTAGCAGACAGATGCGCTGCTGAAAGATGTCAAATCTTGGGAAAATAGCAAAGGTGGTTCTGCCCATGGCAGTGCCCGGAGCCCTTGGTCTGATGTCTACCACTGTTTTTGCTGCAAGCAATGCCAAAGAAAACAGCGCCATCTTGATGACTGATGAGCTCTCACTGTATGACACACCTGAGCCGCGGCTGAGGTACGAGGAGCCTGATGTCGGGCCTGTTGAACAGGGTGTGGCGTCTCTGAGAAAGACTGTTGAACCTTATTGTTCATGGTGTCAGGAAAGGACACAGTTTGCTGTGGATAAAATACAGtCTTACTATAAAACAGTTGAGCCTGGTGTGGATACCACTCAAAATATCGTACAGGatatatttacatttttgaaagacCCTCCATCGGAGTTTTACCCCAGTGTAGGCGTCATTGGGTTTTCTGGAATCCTGGGCCTTTTTTTTGCAAAAGGCAGCACGGTCAAAAGGCTGATATTTCCCACTGGGCTGATGGCTCTCTGTGCCTCTGTGTTTTACCCACAACACGCCGCCTCTGCTGCCAGGaCCACAAAGGACTACATGTACTCGTGGGGTTCAGAGGGGCGAGCTGTTTTGGAGGAGCTGCTGAGAGGAAAATCTTCTTCCAAGGACAAAGCTGACAAGACACAGAAATCAGACAGCCAAAAATCAAGTTGAGACAAAGCAGCTCATTTTATGAAGAGTTCCTGCTTCGCACCTGGATTCTCTTCTCTTATCGGTGTACTGATCAGTATGGTGGTATTTATTACTCTATTACAATGTTGGCAGTGTTCACTGTAATTGTATTCAGCGATGTTTTGTGAATTATATAAATGTacttttatatataaatgcacattataatAGCAACCATTTGGACCAAGCTGAAAGACAGAATCACCTGCATGACTTGTACTGTGCGAATCTGAATGTTGctgaatatttatttacttatacatCCATTTCCAGAGCTTTCTAGATGGGTGCTCGCTTCACTTTCTCCAGGGTTTTCAATGTCACTAAACAAAGATCCAATTTATAAGTTTTATAGTAACTTACAATTTCACAAACCATGAATTTGGTCTGTGCATAAACAAAGAGACATTTTGCAAATTACAGCATCGTCCAGGATCCATTCTGTGCATTCAGCAGTCCCAATTTTACCACTGTGAATTTCACATTTGTATTAGAAGGAAAGCCTGAAGGTATTACTTAAATATAattcttaatatttatttgtttagatttttaatacattaaattgGATACAAAAAAGCTGATTGATAAGCTAATCTTACATATACACTACAGAATATGACACAAGTACTACAGTAACTTCTTCTAGAGTACATTACTGTTTGTTAATATAATCAATAACACAGAGTAtctaaaatattgaattaaagaTCTACAAACTGAGAAA

Function

symbol description
apoob Predicted to be involved in cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of MICOS complex. Orthologous to human APOO (apolipoprotein O).

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061617 MICOS complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-40 Predicted to be involved in cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of MICOS complex. Orthologous to human APOO (apolipoprotein O).

Ensembl:

ensembl_id ENSDARG00000026444

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046360 True 1464 mRNA 0.40 9 21978230 21989406

Neighbor

gene id symbol gene type direction distance location
XLOC_023436 acot9.1 coding downstream 4865 21959708 ~ 21973365 (-)
XLOC_023437 AL627129.1 coding downstream 15062 21963052 ~ 21963168 (-)
XLOC_023435 acot9.2 coding downstream 26066 21938741 ~ 21952164 (-)
XLOC_023434 tagln3b coding downstream 43659 21917012 ~ 21934571 (-)
XLOC_023433 c1qtnf9 coding downstream 63954 21905717 ~ 21914276 (-)
XLOC_023439 si:rp71-1f1.4 coding upstream 1558 21990964 ~ 21991770 (-)
XLOC_023440 si:rp71-1f1.5 coding upstream 12684 22002090 ~ 22003031 (-)
XLOC_023441 si:rp71-1f1.6 coding upstream 25404 22014810 ~ 22015751 (-)
XLOC_023442 NA coding upstream 64403 22053809 ~ 22066831 (-)
XLOC_023443 dap coding upstream 80884 22070290 ~ 22103585 (-)
XLOC_023665 dre-mir-735 misc upstream 16188555 38177961 ~ 38178027 (-)
XLOC_023407 NA non-coding downstream 1446417 20450027 ~ 20531813 (-)
XLOC_023401 BX247944.1 non-coding downstream 1790800 20187316 ~ 20187430 (-)
XLOC_023400 NA non-coding downstream 1793205 20181997 ~ 20185025 (-)
XLOC_023398 NA non-coding downstream 1915180 20060691 ~ 20063050 (-)
XLOC_023445 AL590147.1 non-coding upstream 319538 22308944 ~ 22309058 (-)
XLOC_023446 CT573489.1 non-coding upstream 382580 22371986 ~ 22372100 (-)
XLOC_023448 NA non-coding upstream 889535 22878941 ~ 23218030 (-)
XLOC_023450 CT573302.1 non-coding upstream 1283836 23273242 ~ 23273359 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_04825678_04826167 NA coding CI01000018 null 4825441 ~ 4826167 (-)