G420314



Basic Information


Item Value
gene id G420314
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58253202 ~ 58253429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU476329
GTTCAagctgtcttccaatggtgcgacagctgtcggcatccaaagattattcAACTTCAATAAATGCCTGGAGGTAAGGACACCGGCGGTGGTGTAGCCTAagggcgatacggatatcacgtattattgatatctacatagtgcaatgatgtgaatcacactgcttcTCTCTCATTTAGCCATTTGTgctttacggattgtggttgttgtggatggctgttcacaaat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU476329 True 228 lncRNA 0.44 1 58253202 58253429

Neighbor


gene id symbol gene type direction distance location
LOC110524141 LOC106613631 coding downstream 66153 58163918 ~ 58187049 (-)
pgpi pgpi coding downstream 133163 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 143757 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 171327 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 238542 58002584 ~ 58014660 (-)
LOC118964716 LOC106613467 coding upstream 124129 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 126351 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 163443 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 292955 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 319829 58573258 ~ 58578611 (-)
G420313 NA non-coding downstream 1287 58251638 ~ 58251915 (-)
G420254 NA non-coding downstream 98399 58154580 ~ 58154803 (-)
G420248 NA non-coding downstream 108046 58144488 ~ 58145156 (-)
G420243 NA non-coding downstream 117346 58135356 ~ 58135856 (-)
G420236 NA non-coding downstream 141628 58109657 ~ 58111574 (-)
G420315 NA non-coding upstream 121 58253550 ~ 58253764 (-)
G420316 NA non-coding upstream 902 58254331 ~ 58254556 (-)
G420320 NA non-coding upstream 6192 58259621 ~ 58259877 (-)
G420327 NA non-coding upstream 17318 58270747 ~ 58271025 (-)
G420336 NA non-coding upstream 29299 58282728 ~ 58282929 (-)
G420193 NA other downstream 139142 58112387 ~ 58114060 (-)
G419714 NA other downstream 547266 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 627028 57612040 ~ 57627128 (-)
G419603 NA other downstream 641635 57611059 ~ 57611567 (-)
G418830 NA other downstream 1418607 56834026 ~ 56834595 (-)
G420421 NA other upstream 159699 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 772674 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 879441 59131152 ~ 59138429 (-)
G422347 NA other upstream 1847336 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2805565 61058949 ~ 61081864 (-)

Expression



Co-expression Network