G420338



Basic Information


Item Value
gene id G420338
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58284918 ~ 58285153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU476353
ggtgtaaagagggagtgagggggaggggggatctGCAAATAGTATGgatagccatttgactagatgtaaAGGAATCTTAAGGCTTGGGGGGGGGTAaaagttgtttagaagcctcttaaacccagacttggcgatccggtaccgcttgtagtgcggtagcagagagaacagtctataactagggtCACTGGAGTCTtaaacaatttttagggccttcctctgacacagcctggaat

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU476353 True 236 lncRNA 0.48 1 58284918 58285153

Neighbor


gene id symbol gene type direction distance location
LOC110524141 LOC106613631 coding downstream 97869 58163918 ~ 58187049 (-)
pgpi pgpi coding downstream 164879 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 175473 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 203043 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 270258 58002584 ~ 58014660 (-)
LOC118964716 LOC106613467 coding upstream 92405 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 94627 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 131719 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 261231 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 288105 58573258 ~ 58578611 (-)
G420336 NA non-coding downstream 1989 58282728 ~ 58282929 (-)
G420327 NA non-coding downstream 13893 58270747 ~ 58271025 (-)
G420320 NA non-coding downstream 25041 58259621 ~ 58259877 (-)
G420316 NA non-coding downstream 30362 58254331 ~ 58254556 (-)
G420315 NA non-coding downstream 31154 58253550 ~ 58253764 (-)
G420339 NA non-coding upstream 1340 58286493 ~ 58286817 (-)
G420341 NA non-coding upstream 2917 58288070 ~ 58288306 (-)
G420370 NA non-coding upstream 82123 58367276 ~ 58368693 (-)
G420368 NA non-coding upstream 83754 58368907 ~ 58370010 (-)
G420369 NA non-coding upstream 88006 58373159 ~ 58374034 (-)
G420193 NA other downstream 170858 58112387 ~ 58114060 (-)
G419714 NA other downstream 578982 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 658744 57612040 ~ 57627128 (-)
G419603 NA other downstream 673351 57611059 ~ 57611567 (-)
G418830 NA other downstream 1450323 56834026 ~ 56834595 (-)
G420421 NA other upstream 127975 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 740950 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 847717 59131152 ~ 59138429 (-)
G422347 NA other upstream 1815612 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2773841 61058949 ~ 61081864 (-)

Expression



Co-expression Network