G420370


Basic Information

Item Value
gene id G420370
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58367276 ~ 58368693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476391
TTGAACCTCTTGAAGTTCTAAAAAAACGTTTGTCGTCAGCGACAAAACTCGAAACAGGCAGTCTATCTTAAGGGGCACCCAAGAAGTCTGTGCTACATTAAAATCATTTCTCTCTCCATACCCTGAGGTTTAAGTCACAATTATCTCACTATTCAGGTAGATACTGGATTTGGTTAAACTTATCATTCACAGAACTCTCAGAAACTAAATGAAATATACTAGTTTATGCTTACTGCATTCAAACAAATATAATCCCCCTAATTGTATGGTGCAACAGTTCTAAGACCCTGTAAATTGATCACAATCCTTACAATATTCCATTGAATAAATCTATATTCCATCATTTTGAGGAAGACATTTTCTCAGTAGAATTCCTTGCTCCATCAGGAGACGTTGGTGAGACTGGTTAGCCATGTAATTAGTTCTACCTTTGATCAGCTAGACATATACAGCAGTCTGTTTCTGACACTTTACCCCTAGAATCAATTACAGAAAACAGGACTAAAAAGTCCCATCTGGCACAAAGGAGAAAAAAAGAGGATATAACGATACTTCTTGTTCTACAAGATTAAACGGAGGGAAAGTGGTCAGTGTAAAGGTGTCTTCAGTGTAAAGGGACTGTTGTCATTACAGACTGTTGTCAAAAAACCCACCCTGCACGTCCAATTGCTGCTGGGACCCACGAACCAAGGCAGGGACTGAATGAGGTGCTGGGTGGGCTAGGGTTGGTGTTACGTGCCAAGCCGTAGGTACGCTACACTATTGCCTTCCTGACCCAGTTCTCTGTCCATATCGTCTCTGTCGTCCCCGTCCAGCCCGGGGCTCAACGTCCTGAGATGGCCGGGGCTCCTAACTGACATGGTGGTCAGACTGAGGGCCCGGCcagggtgaggggaggggggcCGGTGTCTGGTGCTGCTGCTGGGCTCTGGGGATTGAGACAGGGCCGGGGTCTTCCTAGAAGTCTCTCCCCCCAGTGACATCTCCTCCTCGGGTGGGCTCTCCAGGTCTGACTCGACgtcgccctcctcctcctcctccagggtaAGTTCAAACTGGAACTTGTCCCCTGTGGAGGTGCAGCAGCCCCCCGCCATGGCCTCCAGGGCCCCTGGCCCCCCGTCAAGGTCCCTGTCCTCGAGGGTGGGTGAGGGGCTGCGCTGGATCATACTCTGGTACCACTCCCGGTTGTCCTCTAGCGTGTCCAGAATGTCCTGGGCGTCAGGGTGGACCAGGTCAGCCCACGTCT
>TU476390
gtatcaagggtgtcaataatttcagactCCATTGTATATAATTATACTGGTACTGTTTGTTTCTTACTCCATACTTATTAACTTGCTTTAGTTCTCAAACTCAAACTCTTCATTTAGATCAATAGAGGGCGCCAGACACATGTCAATCAGTTATGTATTTTTGCGTAACTTGAACCTCTTGAAGTTCTAAAAAAACGTTTGTCGTCAGCGACAAAACTCGAAACAGGCAGTCTATCTTAAGGGGCACCCAAGAAGTCTGTGCTACATTAAAATCATTTCTCTCTCCATACCCTGAGGTTTAAGTCACAATTATCTCACTATTCAGGTAGATACTGGATTTGGTTAAACTTATCATTCACAGAACTCTCAGAAACTAAATGAAATATACTAGTTTATGCTTACTGCATTCAAACAAATATAATCCCCCTAATTGTATGGTGCAACAGTTCTAAGACCCTGTAAATTGATCACAATCCTTACAATATTCCATTGAATAAATCTATATTCCATCATTTTGAGGAAGACATTTTCTCAGTAGAATTCCTTGCTCCATCAGGAGACGTTGGTGAGACTGGTTAGCCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476391 False 1249 lncRNA 0.50 1 58367276 58368524
TU476390 True 584 lncRNA 0.36 1 58368110 58368693

Neighbor

gene id symbol gene type direction distance location
LOC110524141 LOC106613631 coding downstream 180227 58163918 ~ 58187049 (-)
pgpi pgpi coding downstream 247237 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 257831 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 285401 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 352616 58002584 ~ 58014660 (-)
LOC118964716 LOC106613467 coding upstream 8865 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 11087 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 48179 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 177691 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 204565 58573258 ~ 58578611 (-)
G420341 NA non-coding downstream 78970 58288070 ~ 58288306 (-)
G420339 NA non-coding downstream 80459 58286493 ~ 58286817 (-)
G420338 NA non-coding downstream 82123 58284918 ~ 58285153 (-)
G420336 NA non-coding downstream 84347 58282728 ~ 58282929 (-)
G420327 NA non-coding downstream 96251 58270747 ~ 58271025 (-)
G420368 NA non-coding upstream 214 58368907 ~ 58370010 (-)
G420369 NA non-coding upstream 4466 58373159 ~ 58374034 (-)
G420429 NA non-coding upstream 31866 58400559 ~ 58400767 (-)
G420420 NA non-coding upstream 42640 58411333 ~ 58413009 (-)
G420193 NA other downstream 253216 58112387 ~ 58114060 (-)
G419714 NA other downstream 661340 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 741102 57612040 ~ 57627128 (-)
G419603 NA other downstream 755709 57611059 ~ 57611567 (-)
G418830 NA other downstream 1532681 56834026 ~ 56834595 (-)
G420421 NA other upstream 44435 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 657410 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 764177 59131152 ~ 59138429 (-)
G422347 NA other upstream 1732072 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2690301 61058949 ~ 61081864 (-)

Expression


Co-expression Network