G420369


Basic Information

Item Value
gene id G420369
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58373159 ~ 58374034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476385
GCATACAGGTTTCCATATTTATTGGCATTTTCACTTTGAACAACTTGAACTCCAGAAACTTTGGGCTTTAAAAATTATAAACAAAACGAAGCAAATTCTCTAAACAAATATTGGAGCGATAGATGTATACATTTTGAAAGGTATACTTGATTTTTTTTAGGCTCCAGAAAAATGTATtgaaagctagaatccttaattgaaacaacaatgtaactaaataaataaaaaggaatGGGCCTGGATAAATGTACCCACACTCTAATTCATAGactgagctatggatgcaagggaCTGACCCTCCACGCTATCAAAATTATAGTATGAACCATGTTtcgaggctatacagtgtttgtttacatttacattgtttacaaacattggagtaaaacaagcttatatttggggttctgatgggaaTATATTAGTCCAAAAATGCATGTCACAACTACAGATTCTATCGTTAAGATCTCTTTTTACAGACAAATATACTAGGAATAAATATCGGACTTGGAACAACATTGAGGATGAAAGGACGGACATAGAACAGAAGTACAACAGTAATGGCATGCCGTCGTGTGTCACTGTTTCAGAGCAAAGCAATAAAAAGGGACCAAGAGAACAAATTATCACCATTCTAACTTCTCAGCCAACACGTTTAACACTGAATGGCACTGATTTATGTATGTTTTACCCTCAATACAGTTGAGCTCCTCCCCATCACAATTTAAGGTTCTTATTTCAGCTGTTTGCTTATTCATGACCAAACAGCTGAGTGAATGGAATACTGTCAAAGTACAGTATGTATGAATACTAATGTACT
>TU476387
AACTATTTGCGCACAGACAGATTTAAGAATATGCACAAAAATTATCAATTTAATAGGCATACAGGTTTCCATATTTATTGGCATTTTCACTTTGAACAACTTGAACTCCAGAAACTTTGGGCTTTAAAAATTATAAACAAAACGAAGCAAATTCTCTAAACAAATATTGGAGCGATAGATGTATACATTTTGAAAGGTATACTTGATTTTTTTTAGGCTCCAGAAAAATGTATtgaaagctagaatccttaattgaaacaacaatgtaactaaataaataaaaaggaatGGGCCTGGATAAATGTACCCACACTCTAATTCATAGactgagctatggatgcaagggaCTGACCCTCCACGCTATCAAAATTATAGTATGAACCATGTTtcgaggctatacagtgtttgtttacatttacattgtttacaaacattggagtaaaacaagcttatatttggggttctgatgggaaTATATTAGTCCAAAAATGCATGTCACAACTACAGATTCTATCGTTAAGATCTCTTTTTACAGACAAATATACTAGGAATAAATATCGGACTTGGAACAACATTGAGGATGAAAGGACGGACATAGAACAGAAGTACAACAGTAATGGCATGCCGTCGTGTGTCACTGTTTCAGAGCAAAGCAATAAAAAGGGACCAAGAGAACAAATTATCACCATTCTAACTTCTCAGCCAACACGTTTAACACTGAATGGCACTGATTTATGTATGTTTTACCCTCAATACAGTTGAGCTC
>TU476388
GCATACAGGTTTCCATATTTATTGGCATTTTCACTTTGAACAACTTGAACTCCAGAAACTTTGGGCTTTAAAAATTATAAACAAAACGAAGCAAATTCTCTAAACAAATATTGGAGCGATAGATGTATACATTTTGAAAGGTATACTTGATTTTTTTTAGGCTCCAGAAAAATGTATtgaaagctagaatccttaattgaaacaacaatgtaactaaataaataaaaaggaatGGGCCTGGATAAATGTACCCACACTCTAATTCATAGactgagctatggatgcaagggaCTGACCCTCCACGCTATCAAAATTATAGTATGAACCATGTTtcgaggctatacagtgtttgtttacatttacattgtttacaaacattggagtaaaacaagcttatatttggggttctgatgggaaTATATTAGTCCAAAAATGCATGTCACAACTACAGATTCTATCGTTAAGATCTCTTTTTACAGACAAATATACTAGGAATAAATATCGGACTTGGAACAACATTGAGGATGAAAGGACGGACATAGAACAGAAGTACAACAGTAATGGCATGCCGTCGTGTGTCACTGTTTCAGAGCAAAGCAATAAAAAGGGACCAAGAGAACAAATTATCACCATTCTAACTTCTCAGCCAACACGTTTAACACTGAATGGCACTGATTTATGTATGTTTTACCCTCAATACAGTTGAGCTC
>TU476389
GCTATCAAAATTATAGTATGAACCATGTTtcgaggctatacagtgtttgtttacatttacattgtttacaaacattggagtaaaacaagcttatatttggggttctgatgggaaTATATTAGTCCAAAAATGCATGTCACAACTACAGATTCTATCGTTAAGATCTCTTTTTACAGACAAATATACTAGGAATAAATATCGGACTTGGAACAACATTGAGGATGAAAGGACGGACATAGAACAGAAGTACAACAGTAATGGCATGCCGTCGTGTGTCACTGTTTCAGAGCAAAGCAATAAAAAGGGACCAAGAGAACAAATTATCACCATTCTAACTTCTCAGCCAACACGTTTAACACTGAATGGCACTGATTTATGTATGTTTTACCCTCAATACAGTTGAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476385 False 820 lncRNA 0.35 1 58373159 58373978
TU476387 False 766 lncRNA 0.34 1 58373269 58374034
TU476388 False 710 lncRNA 0.35 1 58373269 58373978
TU476389 True 407 lncRNA 0.36 1 58373269 58373675

Neighbor

gene id symbol gene type direction distance location
LOC110524141 LOC106613631 coding downstream 186110 58163918 ~ 58187049 (-)
pgpi pgpi coding downstream 253120 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 263714 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 291284 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 358499 58002584 ~ 58014660 (-)
LOC118964716 LOC106613467 coding upstream 3524 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 5746 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 42838 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 172350 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 199224 58573258 ~ 58578611 (-)
G420368 NA non-coding downstream 3149 58368907 ~ 58370010 (-)
G420370 NA non-coding downstream 4466 58367276 ~ 58368693 (-)
G420341 NA non-coding downstream 84853 58288070 ~ 58288306 (-)
G420339 NA non-coding downstream 86342 58286493 ~ 58286817 (-)
G420338 NA non-coding downstream 88006 58284918 ~ 58285153 (-)
G420429 NA non-coding upstream 26525 58400559 ~ 58400767 (-)
G420420 NA non-coding upstream 37299 58411333 ~ 58413009 (-)
G420422 NA non-coding upstream 40447 58414481 ~ 58415479 (-)
G420437 NA non-coding upstream 46052 58420086 ~ 58420474 (-)
G420193 NA other downstream 259099 58112387 ~ 58114060 (-)
G419714 NA other downstream 667223 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 746985 57612040 ~ 57627128 (-)
G419603 NA other downstream 761592 57611059 ~ 57611567 (-)
G418830 NA other downstream 1538564 56834026 ~ 56834595 (-)
G420421 NA other upstream 39094 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 652069 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 758836 59131152 ~ 59138429 (-)
G422347 NA other upstream 1726731 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2684960 61058949 ~ 61081864 (-)

Expression


Co-expression Network