G420093


Basic Information

Item Value
gene id G420093
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58379916 ~ 58380305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476067
TCAGTGCAGTTATTCAAACTTGATGATCATCCTTGATGACCCATTCACAAGCCGGTTTGGGCTTCGACTTTCCTTGGGATTTCTTGAAAGTAGAGCAGAAGAAAAAGACAAATACAGGTGCAAACGTCATGTTGCTTACAGGTACTGAAGCCAAAGCCCTTCCTTGACACTTATCTCAGACAACACTCTGACCAATTTGAAAAGCCAGTGGGTTGGAGCTCCTCCCACCAATGATTACGATCATCCTCAGGATGTGCTAACGAGATGGATTTTTGTGACCACTTGAGAAGCCAAACTCTCTCATTGGACATCCCACAGCAATTACAACAGCCATTTCATCTCTTCAACCACTTCTCTTTACGTAGAGACAAATTGGTTGGCAAAACAAAA

Function

NR:

description
gamma-interferon-inducible lysosomal thiol reductase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476067 True 390 lncRNA 0.43 1 58379916 58380305

Neighbor

gene id symbol gene type direction distance location
LOC110524143 LOC106573897 coding upstream 9826 58312332 ~ 58370090 (+)
LOC110524142 NA coding upstream 174546 58199387 ~ 58205370 (+)
LOC110524140 LOC106613630 coding upstream 219782 58158521 ~ 58160134 (+)
LOC110524139 lsm4 coding upstream 255518 58120065 ~ 58124398 (+)
LOC110522977 NA coding upstream 293647 58084721 ~ 58086269 (+)
LOC118964627 NA coding downstream 21124 58401429 ~ 58404889 (+)
LOC118964530 NA coding downstream 100632 58480937 ~ 58482309 (+)
LOC110524147 LOC106613637 coding downstream 103738 58484043 ~ 58493673 (+)
LOC110524149 LOC106613638 coding downstream 119800 58500105 ~ 58505933 (+)
LOC110524150 LOC106613639 coding downstream 132624 58512929 ~ 58539436 (+)
G420025 NA non-coding upstream 5925 58373120 ~ 58373991 (+)
G420062 NA non-coding upstream 110490 58269119 ~ 58269426 (+)
G420055 NA non-coding upstream 133378 58245990 ~ 58246538 (+)
G420026 NA non-coding upstream 169806 58205864 ~ 58210110 (+)
G419999 NA non-coding upstream 226076 58151976 ~ 58153840 (+)
G420101 LOC106613635 non-coding downstream 9180 58389485 ~ 58389869 (+)
G420117 LOC100846954 non-coding downstream 30935 58411240 ~ 58418268 (+)
G420118 LOC106613636 non-coding downstream 38059 58418364 ~ 58418789 (+)
G420119 NA non-coding downstream 40115 58420420 ~ 58420673 (+)
G420120 NA non-coding downstream 40721 58421026 ~ 58421360 (+)
G419452 NA other upstream 480268 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1012579 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1421751 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1454740 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1650095 56726185 ~ 56729821 (+)
G420634 NA other downstream 562423 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2313952 60694220 ~ 60695905 (+)
G423922 NA other downstream 3341232 61721537 ~ 61722024 (+)
G424079 NA other downstream 3725218 62105523 ~ 62105872 (+)

Expression


Co-expression Network