G420420



Basic Information


Item Value
gene id G420420
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58411333 ~ 58413009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU476442
aatgatagacggatcatttctttgtcagtaggcaaatgtacaaaatcagcaggggatcaaatacttttttccctcactatGTATTTTTATATCGGAGTCTGTTAATGCCATATGCATTATTATTATACTTAATATTATTATATTTTGGAGTATACCAACATACCAGTTGCACAAGCGATGTGAACAACAATGGCTGTAAAAAATGTGCCTCAAGGATGAAGCTGGTTGGGGAATCACATCAGTATTGCAATGCATATTGTACAATTAGTGATGTTGTGTTGAACACCATCATTTTGGGCTTTTCTACACTACAGTAGTTCTGAAGGTTGATATTGTGTCCATTTGTACTTGCTGTTATGTAACTGTCTGTATATATCAAGCGTTGGCGGAGGGGATGTTCTTTCGACGTCTCAACAGATCCTCAAAAGAGGTCTATATTTTCAGATTTGATGAACTACTCAGAAGTCGGTGGTGGTGAAATAGAATTATACCCAGGACATGCTATCTCGCAAAGCCGGTCAGAATTGTTTACAACGAACATGCTATGTACAATTTGAACAAATGGTCTTTTGTAAATCCTGTGTTTCTATGTACTGTGTAGGTATTGTGTTGCAGTCTGTGCATTTCAACACTACACCGTTTTAAAGGCTTTTACTCAAGTACCTTTTTGGAACTGTAAAACTTCCGAACTGTTCTATAAGAATACAGTATGATGCATTTCTCTTGTTTACGCCTTTGTTAGCTGCATGCTGCATGAGACAAGGACACATCATACTTGATTGCATGGTACTCTGGGTTTATATAGCCCGGTGCTGGGGTTTCTACAGTGTGTCTAATAGAGCATTTGTGTGCAAAGTCAACTTTTGCACTTTCCTCTGACTCCTACTCATCATACCCTGAACCACAAATAGACAACTGGTCTGTTTTCCTAATAGTTGTAGGTATTTTTCTGTGTGTACTGGGATGAAATCTTCCACTCTCGGGATGTGTATGTCTAATGTTTTTCACTTTCTCACCACTGCGCGGTAAAATAATCTCTTTCGTCATCTACGTCATAAGGGGGATGCATGTGGTTCATCGAGGGCTGGGAGTGAAGCTTAGACGGTTAGGCTACGCATAGTCCATTAGTCTACAGTGGTTTGTCTCTCTTGCATTTAACCCTCATTTTAACACATTTTCCATTTTGTCTGCTATCGGAACTCCTCTATGCTGACTTAGTTGTAGACAAGGGTACCTGTACACATTGTCACACACTTACAGGGTCAAATGGACACATATGCAAAAACATGTCCACATTAATTCTTTCCCTTTTGTTTAATTCTGTGATTGGGTTAGAAATACTGGAGGTACAGTGCTATAATGTCCATTTTATGTGAATATGGAGAGTATGGTGGTGTTCATATTTGTTTCATTTGAAGCCAGTTTTGTCTGACTAGTTTTTCTTTTTGTGGTTCTAACTGTATGGCCTAGCGCCCTATTCAAACAAAAGCAAATGTTGAGTAAATAGATGGCTAGGATGTGAATATGCCTATGGTTGGGTTGGACTATTGAATGTGTTTGCCGAGAAGTGCTTGTGTACCTGAGAATCCGAACAATTTTGCAGGCTCACATCACTTTGCTTCGTTTGAACATCTGTCTGCTTTTGTTTAAGTAGGGATGCCGGCCATCCTTGGTACA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU476442 True 1677 lncRNA 0.39 1 58411333 58413009

Neighbor


gene id symbol gene type direction distance location
LOC110524144 LOC106613635 coding downstream 2013 58379780 ~ 58409320 (-)
LOC118964716 LOC106613467 coding downstream 31288 58377558 ~ 58380045 (-)
LOC110524141 LOC106613631 coding downstream 224284 58163918 ~ 58187049 (-)
pgpi pgpi coding downstream 291294 58115798 ~ 58120039 (-)
LOC110524138 LOC106613627 coding downstream 301888 58090616 ~ 58109445 (-)
mast3b LOC106613636 coding upstream 3863 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 133375 58546384 ~ 58567683 (-)
LOC110524152 LOC100194657 coding upstream 160249 58573258 ~ 58578611 (-)
LOC110524158 LOC106613645 coding upstream 258462 58671471 ~ 58675928 (-)
LOC110524167 LOC106613995 coding upstream 421253 58834262 ~ 58836111 (-)
G420429 NA non-coding downstream 10566 58400559 ~ 58400767 (-)
G420369 NA non-coding downstream 37299 58373159 ~ 58374034 (-)
G420368 NA non-coding downstream 41323 58368907 ~ 58370010 (-)
G420370 NA non-coding downstream 42640 58367276 ~ 58368693 (-)
G420422 NA non-coding upstream 1472 58414481 ~ 58415479 (-)
G420437 NA non-coding upstream 7077 58420086 ~ 58420474 (-)
G420442 NA non-coding upstream 43356 58456365 ~ 58456602 (-)
G420466 NA non-coding upstream 64778 58477787 ~ 58477998 (-)
G420468 NA non-coding upstream 65357 58478366 ~ 58478835 (-)
G420193 NA other downstream 297273 58112387 ~ 58114060 (-)
G419714 NA other downstream 705397 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 785159 57612040 ~ 57627128 (-)
G419603 NA other downstream 799766 57611059 ~ 57611567 (-)
G418830 NA other downstream 1576738 56834026 ~ 56834595 (-)
G420421 NA other upstream 119 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 613094 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 719861 59131152 ~ 59138429 (-)
G422347 NA other upstream 1687756 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2645985 61058949 ~ 61081864 (-)

Expression



Co-expression Network