Gene
RNA
| Item | Value |
|---|---|
| gene id | G420120 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 58421026 ~ 58421360 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| microtubule-associated serine/threonine-protein kinase 3-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU476107 | True | 335 | lncRNA | 0.53 | 1 | 58421026 | 58421360 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964627 | NA | coding | upstream | 16137 | 58401429 ~ 58404889 (+) |
| LOC110524143 | LOC106573897 | coding | upstream | 50936 | 58312332 ~ 58370090 (+) |
| LOC110524142 | NA | coding | upstream | 215656 | 58199387 ~ 58205370 (+) |
| LOC110524140 | LOC106613630 | coding | upstream | 260892 | 58158521 ~ 58160134 (+) |
| LOC110524139 | lsm4 | coding | upstream | 296628 | 58120065 ~ 58124398 (+) |
| LOC118964530 | NA | coding | downstream | 59577 | 58480937 ~ 58482309 (+) |
| LOC110524147 | LOC106613637 | coding | downstream | 62683 | 58484043 ~ 58493673 (+) |
| LOC110524149 | LOC106613638 | coding | downstream | 78745 | 58500105 ~ 58505933 (+) |
| LOC110524150 | LOC106613639 | coding | downstream | 91569 | 58512929 ~ 58539436 (+) |
| LOC110524154 | NA | coding | downstream | 158182 | 58579542 ~ 58620188 (+) |
| G420119 | NA | non-coding | upstream | 353 | 58420420 ~ 58420673 (+) |
| G420118 | LOC106613636 | non-coding | upstream | 2237 | 58418364 ~ 58418789 (+) |
| G420117 | LOC100846954 | non-coding | upstream | 2758 | 58411240 ~ 58418268 (+) |
| G420101 | LOC106613635 | non-coding | upstream | 31157 | 58389485 ~ 58389869 (+) |
| G420093 | NA | non-coding | upstream | 40721 | 58379916 ~ 58380305 (+) |
| G420122 | NA | non-coding | downstream | 1740 | 58423100 ~ 58423510 (+) |
| G420132 | NA | non-coding | downstream | 12895 | 58434255 ~ 58434504 (+) |
| G420133 | NA | non-coding | downstream | 13229 | 58434589 ~ 58434895 (+) |
| G420134 | NA | non-coding | downstream | 14603 | 58435963 ~ 58436185 (+) |
| G420136 | NA | non-coding | downstream | 18650 | 58440010 ~ 58440241 (+) |
| G419452 | NA | other | upstream | 521378 | 57884380 ~ 57899648 (+) |
| LOC110524119 | LOC106613607 | other | upstream | 1053689 | 57352343 ~ 57367627 (+) |
| LOC100135807 | LOC106613594 | other | upstream | 1462861 | 56943838 ~ 56958165 (+) |
| G418251 | rtca | other | upstream | 1495850 | 56923924 ~ 56925176 (+) |
| G420634 | NA | other | downstream | 521368 | 58942728 ~ 58944217 (+) |
| LOC110524226 | LOC106573564 | other | downstream | 2272897 | 60694220 ~ 60695905 (+) |
| G423922 | NA | other | downstream | 3300177 | 61721537 ~ 61722024 (+) |
| G424079 | NA | other | downstream | 3684163 | 62105523 ~ 62105872 (+) |
| LOC110524265 | LOC106613745 | other | downstream | 3861792 | 62283054 ~ 62327772 (+) |
